Fine scale biologging of an inshore marine animal

We compared the results of two biologging techniques used to study the foraging behaviour of a colony of small inshore predators, little penguins (Eudyptula minor). The first technique involved the use of satellite transmitters and diving loggers deployed on separate individuals, which has been the conventional method of tracking the movements and behaviour of this species for > 10 years. The second technique combined a diving logger and a global positioning system (GPS) logger deployed on the same individual, which is similar to the biologging methods presently being developed and used for many other species. We then considered the value of each technique as a conservation tool operating at the small scale (foraging area < 5000 ha and duration < 1 day).We found that the separately deployed satellite transmitters significantly underestimated the penguins' foraging area size. However, the size of the foraging area and other foraging parameters, such as total distance travelled, were influenced by the degree of GPS location sub-sampling. Furthermore, only the combined diving and GPS loggers could confidently describe the diving behaviour of the penguins in relation to the sea floor and identify that they were using small areas of conservation interest (shipping channel) inside their foraging area.Hence, the method employed to assess habitat use at fine scales can influence conservation measures that rely upon the data collected. We suggest that researchers fast-track their adoption of high resolution multi-loggers for increased data confidence when tracking animals at a fine scale, but also consider the potential effect of sampling rate on the calculation of parameters of interest.     

C-8 Modifications of 3-alkyl-1,8-dibenzylxanthines as inhibitors of human cytosolic phosphoenolpyruvate carboxykinase

New modifications on the C-8 4-aminobenzyl unit of the previously reported 3-alkyl-1,8-dibenzylxanthine inhibitors of cPEPCK are presented. The most active compound reported here is the 5-chloro-1,3-dimethyl-1H-pyrazole-4-sulfonic acid amide derivative 2 with an IC(50) of 0.29+/-0.08 microM. An X-ray analysis of a heteroaromatic sulfonamide is presented showing a new pi-pi interaction.     

Zur Technik und Methode der Bienenversuche mit Farbpapieren und Glasfiltern

Zusammenfassung Die Tatsache, daß reflektiertes Tageslicht für die Biene dann neutral oder farblos ist, wenn es in seiner spektralen Zusammensetzung nicht wesentlich von der Zusammensetzung des Sonnenlichtes — soweit dieses den Bienen sichtbar ist — abweicht, bzw. die Tatsache, daß bei mehr oder weniger vollständigem Fehlen von Ultraviolett weißes Licht für die Biene farbig wird, macht bestimmte Vorsichtsmaßregeln im Gebrauch von Farbpapieren, Graupapieren, Glasplatten und Filtergläsern im Bienenversuch notwendig. Solche Vorsichtsmaßregeln sind bisher nicht oder nicht ausreichend beachtet worden. Für die wichtigeren Ergebnisse bleibt das ohne nachteilige Folgen, einige weitere Ergebnisse erscheinen nun zweifelhaft und sollten nachgeprüft werden.     

Identification of consensus patterns in unaligned DNA sequences known to be functionally related

We have developed a method for identifying consensus patternsin a set of unaligned DNA sequences known to bind a common proteinor to have some other common biochemical function. The methodis based on a tnatrix representation of binding site patterns.Each row of the matrix represents one of the four possible bases,each column represents one of the positions of the binding siteand each element is determined by the frequency the indicatedbase occurs at the indicated position. The goal of the methodis to find the most significant matrix-i.e. the one with thelowest probability of occurring by chance-out of all the matricesthat can be formed from the set of related sequences. The reliabilityof the method improves with the number of sequences, while thetime required increases only linearly with the number of sequences.To test this method, we analysed 11 DNA sequences containingpromoters regulated by the Escherichia coli LexA protein. Thematrices we' found were consistent with the known consensussequence, and could distinguish the generally accepted LexAbinding sites from other DNA sequences. Received on November 6, 1989; accepted on December 20, 1989     

Rates of oxygen uptake by embryonic anterior horn tissue isolated at various developmental stages.

Neuroepithelial cells of the presumptive spinal cord (stage 11) consume oxygen, albeit at a low rate. As neurons differentiate in the presumptive motor horns the rate of oxygen consumption increases to approximately 70 mumoles/g wet wt/hr by stage 26. It is suggested that the rate of oxygen consumption per unit volume of neuron then remains constant as subsequent development ensues but since the neurons become more widely spaced the oxygen consumption per unit volume of anterior horn tissue decreases.     

An antigen common to a wide range of bacteria. I. The isolation of a 'common antigen' from Pseudomonas aeruginosa

In crude water-soluble extracts of Pseudomonas aeruginosa 64 antigens can be demonstrated by crossed immunoelectrophoresis in agarose with polyvalent Pseudomonas-immunoglobulin. One of these antigens cross-reacts with antigens prepared from bacteria of a wide range of taxonomic groups. Monospecific immunoglobulins to this antigen (Common Antigen) were produced by immunization with the appropriate immunocomplex extracted from agarose. Common Antigen was purified by the combination of two fractionation methods: Precipitation of the crude extract with 18% (w/v) sodium sulfate, followed by gel filtration of the supernatant on a Sephadex G-200 column. By this method, 35% of Common Antigen from the crude extract was recovered, more than half of the fractions electrophoretically pure. Electrophoresis of reduced Common Antigen on a dodecyl sodium sulfate polyacrylamide gel revealed two protein bands with apparent molecular weights of 59-62 000 and 62-65 000, respectively. The untreated antigen, however, passed a column of Sephadex G-200 with the void volumen, indicating a substance of high molecular weight (> 4-600 000).     

Identification and Validation of Proteinase 3 and Latent Matrix-Metalloproteinase 9 as Potential Biomarkers for Chronic Lung Transplant Rejection

Introduction

This study examined potential biomarkers for the diagnosis and early detection of chronic allograft rejection after lung transplantation.

Methods

Protein ratios in pooled samples of bronchoalveolar lavage fluid (BALF) from lung transplant recipients at different stages of pre- and postchronic rejection were determined by iTRAQ labeling and mass spectrometry. The potential biomarkers were validated using enzyme-linked immunosorbent assay (ELISA) assay.

Results

Two hundred sixty-five proteins were identified, about two thirds of which showed more than a twofold difference between a pooled control sample (individuals who did not develop chronic rejection in 100 months) and a pooled sample from those with chronic rejection. Proteinase 3 (PR-3) and matrix metalloproteinase 9 (MMP-9) were validated by ELISA assay of 124 individual samples. PR-3 and the latent form of MMP-9 (proMMP9) both demonstrated a specificity of 92% with sensitivities of 76% and 82%, respectively, for disease diagnosis; both were also predictors of developing chronic rejection up to 15 months before diagnosis. While immunoglobulin M (IgM) was upregulated in the pooled samples, individual sample analysis revealed that this arose from outlier values.

Conclusions

iTRAQ can be used to detect a large number of proteins in pooled samples for the discovery of potential biomarkers, but the findings must be validated with technology capable of distinguishing broadly based changes from outcomes as a result of a few extreme cases. The proteins identified in this study expanded the panel of potential biomarkers for the diagnosis and prediction of chronic rejection and provided additional insight into the mechanism of the disease.