Dissociating ocular dominance column development and ocular dominance plasticity: a neurotrophic model

 Recent experimental data indicate that both neurotrophic factors (NTFs) and intracortical inhibitory circuitry are implicated in the development and plasticity of ocular dominance columns. We extend a neurotrophic model of developmental synaptic plasticity, which previously failed to account correctly for the differences between monocular deprivation and binocular deprivation, and show that the inclusion of lateral cortical inhibition is indeed necessary in understanding the effects of visual deprivation in the model. In particular, we argue that monocular deprivation causes a differential shift in the balance between inhibition and excitation in cortical columns, down-regulating NTFs in deprived-eye columns and up-regulating NTFs in undeprived-eye columns; during binocular deprivation, however, no such shift occurs. We thus postulate that the response to visual deprivation is at the level of the cortical circuit, while the mechanisms of afferent segregation are at the molecular or cellular level. Such a dissociation is supported by recent experimental work challenging the assumption that columnar organisation develops in an activity-dependent, competitive fashion. Our extended model also questions recent attempts to distinguish between heterosynaptic and homosynaptic models of synaptic plasticity. Received: 17 April 2001 / Accepted in revised form: 7 November 2001     

Differentiation of the effects of lethal pH and water activity: food safety implications

The influence of a second lethal stress (SLS) was investigated when populations of Escherichia coli M23 OR.H- were exposed to either a low water activity (aw) of 0.90 or a pH of 3.50 after 24 h at 25 degrees C. Regardless of the initial stress, E. coli M23 OR.H- populations initially demonstrated biphasic inactivation kinetics consisting of a rapid first phase of death followed by a slower second phase. When cultures initially exposed to aw 0.90 experienced an SLS of pH 3.50, a second rapid inactivation period was observed before a subpopulation of more resistant cells emerged. This subpopulation was able to persist for approximately 50 h after imposition of the SLS. In contrast, E. coli M23 OR.H- cells first exposed to a pH of 3.50 were inactivated rapidly to levels below the limits of detection upon imposition of an SLS of aw 0.90. It is hypothesized that pH stress constitutes a large energy drain on the cell and subsequently sensitizes it to other environmental constraints requiring expenditure of metabolic energy.     

Effects of habitat fragmentation on the movement patterns and dispersal ability of the brown spiny rat (<Emphasis Type="Italic">Maxomys rajah</Emphasis>) in the Planted Forest Zone of Sarawak,Eastern Malaysia

Brown spiny rats (Maxomys rajah) were translocated from continuous secondary forest to small isolated patches of remnant native forest embedded within Acacia mangium plantation in the Planted Forest Zone of Sarawak, East Malaysia, and fitted with tracking spools to monitor behaviours in novel environments and to record responses to a range of habitat edge features. Forest roads, large clearings and acacia plantation compartments were found to pose barriers to dispersal of brown spiny rats over short temporal scales, whereas old regenerating haul trails were readily crossed on 50% of the encounters. Downed woody debris accounted for a greater proportion of the travel route compared with brown spiny rats tracked in secondary and primary forest in Sabah, which may represent heightened predator avoidance in new environments. Provision of downed woody debris within plantation compartments may improve the dispersal ability of brown spiny rats in this modified landscape, and thus promote metapopulation dynamics and colonisation of vacant habitat patches.     

Multiplexed expression and screening for recombinant protein production in mammalian cells

Background  

A variety of approaches to understanding protein structure and function require production of recombinant protein. Mammalian based expression systems have advantages over bacterial systems for certain classes of protein but can be slower and more laborious. Thus the availability of a simple system for production and rapid screening of constructs or conditions for mammalian expression would be of great benefit. To this end we have coupled an efficient recombinant protein production system based on transient transfection in HEK-293 EBNA1 (HEK-293E) suspension cells with a dot blot method allowing pre-screening of proteins expressed in cells in a high throughput manner.     

Role of Immunohistochemistry in Staging Diffuse Large B-cell Lymphoma (DLBCL)

The use of immunohistochemistry (IHC) in staging bone marrow in non-Hodgkin''s lymphoma (NHL) is largely limited to ambiguous cases, particularly those with lymphoid aggregates. Its role in routine clinical practice remains unestablished. This study aimed to determine whether the routine use of IHC in diffuse large B-cell lymphoma (DLBCL) would improve the detection of lymphomatous involvement in the bone marrow. It also sought to determine the impact of IHC on predicting survival compared with routine histological diagnosis using hematoxylin and eosin (H&E), Giemsa, and reticulin staining. The bone marrow trephines of 156 histologically proven DLBCL cases were assessed on routine histology, and IHC using two T-cell markers (CD45RO and CD3), two B-cell markers (CD20 and CD79a), and κ and λ light chains. IHC detected lymphomatous involvement on an additional 11% cases compared with histology alone. Although both routine histology and IHC were good predictors of survival, IHC was better at predicting survival on stepwise multivariate Cox regression analysis. IHC performed routinely on bone marrow trephines has the ability to improve detection of occult lymphoma in experienced hands. Furthermore, it is a better predictor of survival compared with routine histological examination alone. (J Histochem Cytochem 56:893–900, 2008)     

A mathematical model of activity–dependent,anatomical segregation induced by competition for neurotrophic support

Mathematical or computational models of activity–dependent neural competition typically impose competition in anatomically fixed networks by the use of synaptic normalisation, for which there is very little experimental support. Recent experimental evidence, however, strongly implicates neurotrophic factors in neural plasticity and competition, in addition to their well–known potent effects on neurite outgrowth and synaptogenesis. We therefore present a simple, mathematical model of anatomical segregation induced by activity–dependent competition for a limited supply of a neurotrophic factor provided by target cells to afferents. We extract the behaviour of the model in various regimes, in which the neurotrophic factor is either in critical supply or in abundant supply, by a combination of analytical and numerical methods, and study the effects of correlations in afferent inputs on competition. We apply the model to three different systems: ocular dominance column formation; elimination of polyneuronal innervation at the vertebrate neuromuscular junction; trigeminal brain stem whisker–related structure formation. Several classes of related predictions emerge, including the prediction that kittens reared with strabismus should require a higher concentration of neurotrophic factor infusion into their primary visual cortex than normally reared cats in order to induce the anatomical desegregation of ocular dominance columns. We also speculate on the mechanisms of support of inhibitory rather than excitatory neurons, and suggest the existence of a separate, Cl–mediated activity–dependent pathway for their neurotrophic support. Received: 17 May 1996 / Accepted in revised form: 27 July 1996     

Routine use of ancillary investigations in staging diffuse large B-cell lymphoma improves the International Prognostic Index (IPI)

Objective

Curative surgery is not an option for many patients with clinical stage I non-small-cell lung carcinoma (NSCLC), but radical radiosurgery may be effective.

Methods

Inoperable patients with small peripheral clinical stage I NSCLC were enrolled in this study. Three-to-five fiducial markers were implanted in or near tumors under CT guidance. Gross tumor volumes (GTVs) were contoured using lung windows. The GTV margin was expanded by 5 mm to establish the planning treatment volume (PTV). A dose of 42–60 Gy was delivered to the PTV in 3 equal fractions in less than 2 weeks using the CyberKnife radiosurgery system. The 30-Gy isodose contour extended at least 1 cm from the GTV. Physical examination, CT imaging and pulmonary function testing were completed at 6 months intervals for three years following treatment.

Results

Twenty patients with an average maximum tumor diameter of 2.2 cm (range, 1.1 – 3.5 cm) and a mean FEV1 of 1.08 liters (range, 0.53 – 1.71 L) were treated. Pneumothorax requiring tube thoracostomy occurred following CT-guided fiducial placement in 25% of the patients. All patients completed treatment with few acute side effects and no procedure-related mortality. Transient chest wall discomfort developed in 8 of the 12 patients with lesions within 5 mm of the pleura. The mean percentage of the total lung volume receiving a minimum of 15 Gy was 7.3% (range, 2.4% to 11.3%). One patient who received concurrent gefitinib developed short-lived, grade III radiation pneumonitis. The mean percent predicted DLCO decreased by 9% and 11% at 6 and 12 months, respectively. There were no local failures, regional lymph node recurrences or distant metastases. With a median follow-up of 25 months for the surviving patients, Kaplan-Meier overall survival estimate at 2 years was 87%, with deaths due to COPD progression.

Conclusion

Radical CyberKnife radiosurgery is a well-tolerated treatment option for inoperable patients with small, peripheral stage I NSCLC. Effective doses and adequate margins are likely to have contributed to the optimal early local control seen in this study.     

Quantification of the Relative Effects of Temperature,pH, and Water Activity on Inactivation of Escherichia coli in Fermented Meat by Meta-Analysis

Outbreaks of Escherichia coli infections linked to fermented meats have prompted much research into the kinetics of E. coli inactivation during fermented meat manufacture. A meta-analysis of data from 44 independent studies was undertaken that allowed the relative influences of pH, water activity (a_w), and temperature on E. coli survival during fermented meat processing to be investigated. Data were reevaluated to determine rates of inactivation, providing 484 rate data points with various pH (2.8 to 6.14), a_w (0.75 to 0.986), and temperature (−20 to 66°C) values, product formulations, and E. coli strains and serotypes. When the data were presented as an Arrhenius model, temperature (0 to 47°C) accounted for 61% of the variance in the ln(inactivation rate) data. In contrast, the pH or a_w measured accounted for less than 8% of variability in the data, and the effects of other pH- and a_w-based variables (i.e., total decrease and rates of reduction of those factors) were largely dependent on the temperature of the process. These findings indicate that although temperatures typically used in fermented meat manufacture are not lethal to E. coli per se, when other factors prevent E. coli growth (e.g., low pH and a_w), the rate of inactivation of E. coli is dominated by temperature. In contrast, inactivation rates at temperatures above ∼50°C were characterized by smaller z values than those at 0 to 47°C, suggesting that the mechanisms of inactivation are different in these temperature ranges. The Arrhenius model developed can be used to improve product safety by quantifying the effects of changes in temperature and/or time on E. coli inactivation during fermented meat manufacture.Fermented meats encompass a diverse range of product styles in which raw, ground meat is preserved by the processes of fermentation and drying (or maturation). These products are typically manufactured without a bactericidal heat treatment, and instead, inhibition of growth and inactivation of contaminating pathogens rely upon the collective effects of acid pH, reduced water activity (a_w), and the presence of lactic acid and, potentially, curing salts (nitrate and/or nitrite) and spices. However, pathogenic Escherichia coli can contaminate and survive in fermented meat products at levels sufficient to cause serious illness in consumers, as evidenced by numerous outbreaks of E. coli infections epidemiologically linked to uncooked fermented meat products (8, 9, 54, 64). Knowledge of the kinetics of nonthermal inactivation of E. coli, and the factors affecting it, is important to be able to optimize the safety of fermented meat processes.Several research groups have conducted studies on the survival of pathogenic E. coli during the processing of specific fermented meat products (4, 6, 14, 16, 23, 25). In some cases, the effects of alternative ingredients or processing parameters have also been determined (12, 21, 24, 30). Such investigations have allowed the lethality of a specific fermented meat process to be determined and the microbiological safety of that product, in regards to E. coli, to be described. However, most of these studies have been essentially empirical and product/process specific, i.e., they have not sought to discern key variables or their interactions that influence the extent of inactivation of E. coli or other pathogens during meat fermentation and maturation. Thus, while they are very important and useful, it has been difficult to extrapolate the results of those studies to different fermented meat processes, confounding efforts to assess product safety without the requirement for challenge tests or to give manufacturers the confidence to develop new or modified processes that remain safe.In an attempt to identify the main factors that influence the inactivation of E. coli in fermented meat products, we utilized data that already existed in the scientific literature and reassessed that information via a process similar to meta-analysis. Meta-analysis is a statistical technique that involves amalgamating, summarizing, and reviewing previous quantitative research to identify trends. It is used, albeit rarely in the area of microbiology, as a means to address a wide variety of questions where a reasonable body of primary research studies exists. In a preliminary investigation, based on an analysis of limited published and other data, Ross and Shadbolt (51) observed that inactivation of E. coli in fermented meat processes was dominated by temperature and that pH and a_w levels appeared to be less influential, except insofar as creating conditions inimical to E. coli growth. The objective of the present investigation was to rigorously test that observation by collation and analysis of a large data set describing the inactivation of E. coli during manufacture of fermented meats and to attempt to identify underlying patterns in the responses of E. coli to conditions encountered during fermented meat processes. From the observations of Ross and Shadbolt (51), and because the inactivation of E. coli in fermented meat is not instantaneous, we based our analyses on the rate of E. coli inactivation, calculated from viable count data and processing times reported by a variety of published and unpublished sources. We sought to relate the inactivation rate to reported environmental conditions, including pH, a_w, and temperature, and to summarize the observations in a predictive mathematical model.