Sequence variation in the outer-surface-protein genes of Borrelia burgdorferi

Borrelia burgdorferi is a spirochete pathogen transmitted among warm- blooded hosts by ixodid ticks. Frequency-dependent selection for variant outer-surface proteins might be expected to arise in this species, since rare variants are more likely to avoid immune surveillance in previously infected hosts. We sequenced the OspA and OspB genes of nine North American strains and compared them with nine strains previously described. For each gene, the mean number of synonymous substitutions per synonymous site and the mean number of nonsynonymous substitutions per nonsynonymous site show only a twofold excess of silent mutations. Synonymous rates vary widely along the OspB protein. Some regions show a significant excess of silent substitutions, while divergence in other regions is constrained by biased base composition or selection. The presence, in antigenically important regions of the protein, of significant variation among strains, as well as evidence for recombination among strains, should be considered in attempts to develop vaccines against this disease.      

Bioenergetics of the range caterpillar,Hemileuca oliviae (Ckll.)

Summary The energy budget of the New Mexico range caterpillar, Hemileuca oliviae (Ckll.), was estimated on caterpillars reared on an artificial diet under constant conditions. There was a 54% average age-specific decrease in assimilation efficiency in the larval stages. Net production efficiency was relatively constant at 52%. Of the 26.77 cal/mg produced by the feeding larvae, 0.53 cal/mg were expended by the pupae and 0.59 cal/mg were expended by the adults. Since maintenance costs of the non-feeding stages accounted for only four percent of the larval production, that production was adequate for adult development and reproduction.     

Aphid-induced reduction of shoot and root growth in Douglas-fir seedlings

1. The short‐ and long‐term effects of photosynthate removal by sap‐sucking herbivores on plant growth were examined by experimentally manipulating densities of an aphid Cinara pseudotsugae (Wilson) on 2‐year‐old Douglas‐fir seedlings Pseudotsuga menziesii (Mirb.) Franco under greenhouse conditions. An 18‐week test was conducted to determine short‐term effects. Effects of long‐term aphid feeding were examined by exposing seedlings to aphid feeding for two consecutive growing seasons. A third experiment evaluated the extent of recovery during 1 year following a single season of aphid feeding. At least 35 seedlings were used in each test. 2. Volume and dry weight of both shoots and roots decreased significantly with increasing aphid feeding in all three experiments. 3. The most significant and severe aphid effect was reduced root tissue density, suggesting carbohydrate depletion due to translocation from roots to shoots. 4. There was no sign of recovery, of either root or shoot growth, during the year following one season of feeding. 5. The results of this study indicate that short‐term feeding by aphids can affect plant growth and structure for a relatively long time.     

Invertebrate communities in a tropical rain forest canopy in Puerto Rico following Hurricane Hugo

1. Canopy invertebrate responses to Hurricane Hugo, tree species, and recovery time were examined at the Luquillo Experimental Forest in Puerto Rico during 1991–92 and 1994–95. Six tree species representing early and late successional stages were examined in paired plots representing severe hurricane disturbance (most trees toppled) and light hurricane disturbance (all trees standing and most branches intact). 2. Hurricane disturbance affected invertebrate abundances significantly. Sap-suckers and molluscs were more abundant, and defoliators, detritivores, and emergent aquatic insects were less abundant in recovering tree-fall gaps than in intact forest during this 5-year period. These changes in functional organisation are consistent with comparable studies of arthropod responses to canopy removal during harvest in temperate forests. 3. Tree species also affected invertebrate abundances significantly, but invertebrate communities did not differ significantly between the three early successional and three later successional tree species. 4. Most taxa showed significant annual variation in abundances, but only two Homoptera species showed a significant linear decline in abundance through time, perhaps reflecting long-term trends during recovery. 5. Leaf area missing, an indicator of herbivore effect on canopy processes, showed significant seasonal and annual trends, as well as differences among tree species and hurricane treatments. Generally, leaf area missing peaked during the wet season each year, but reached its highest levels during an extended drought in 1994. Leaf area missing also tended to be higher on the more abundant tree species in each disturbance treatment. 6. Herbivore abundances and leaf area missing were not related to concentrations of nitrogen, phosphorous, potassium, or calcium in the foliage. 7. This study demonstrated that invertebrate community structure and herbivory are dynamic processes that reflect the influences of host species and variable environmental conditions.     

The ecological integrity of the lower Olifants River,Limpopo province,South Africa: 2009–2015 – Part B: Tributaries of the Olifants River

Monitoring on the Lowveld reaches of the Olifants River, Limpopo River System, and its Steelpoort, Blyde, Klaserie and Selati tributaries was initiated in 2009. Analysis of the 2009–2015 data from four Olifants River sites showed deterioration in the river’s ecological condition between where it enters the Lowveld and where it enters the Kruger National Park, with a slight recovery within the Kruger National Park. Physico-chemical, aquatic macroinvertebrate and fish data collected in 2009–2015 at six sites on the Steelpoort, Blyde, Klaserie and Selati tributaries of the Olifants River corroborated the ecological condition of these tributaries. The Selati was the most polluted and was in a critically modified condition, whereas the Klaserie and Steelpoort were in fair condition and the Blyde was in good condition. The Selati appeared to have a significant negative impact on the water quality, macroinvertebrates and fish of the Olifants River within the Kruger National Park.     

Isocitrate dehydrogenase 1 R132C mutation occurs exclusively in microsatellite stable colorectal cancers with the CpG island methylator phenotype

The CpG Island Methylator Phenotype (CIMP) is fundamental to an important subset of colorectal cancer; however, its cause is unknown. CIMP is associated with microsatellite instability but is also found in BRAF mutant microsatellite stable cancers that are associated with poor prognosis. The isocitrate dehydrogenase 1 (IDH1) gene causes CIMP in glioma due to an activating mutation that produces the 2-hydroxyglutarate oncometabolite. We therefore examined IDH1 alteration as a potential cause of CIMP in colorectal cancer. The IDH1 mutational hotspot was screened in 86 CIMP-positive and 80 CIMP-negative cancers. The entire coding sequence was examined in 81 CIMP-positive colorectal cancers. Forty-seven cancers varying by CIMP-status and IDH1 mutation status were examined using Illumina 450K DNA methylation microarrays. The R132C IDH1 mutation was detected in 4/166 cancers. All IDH1 mutations were in CIMP cancers that were BRAF mutant and microsatellite stable (4/45, 8.9%). Unsupervised hierarchical cluster analysis identified an IDH1 mutation-like methylation signature in approximately half of the CIMP-positive cancers. IDH1 mutation appears to cause CIMP in a small proportion of BRAF mutant, microsatellite stable colorectal cancers. This study provides a precedent that a single gene mutation may cause CIMP in colorectal cancer, and that this will be associated with a specific epigenetic signature and clinicopathological features.     

Characterization of progesterone receptor binding to the 90- and 70-kDa heat shock proteins

In this study a model system for expression of the chicken progesterone receptor in cultured cells was developed using a quail fibroblast cell line, QT6. The chicken progesterone receptor form A expressed in QT6 cells was evaluated and determined to have a number of similarities to receptor isolated from chicken oviduct. These include hormone binding, sedimentation profile, phosphorylation pattern, heat shock protein (hsp) 70 and hsp90 associations and the ability to stimulate a reporter gene construct. Therefore, the receptor expressed in this system functioned adequately for further evaluation of the particular region (or regions) involved in hsp70 and hsp90 binding. Several receptor deletion mutants were tested for hsp70/hsp90 binding; only the d369-659 mutant, which has the entire steroid-binding domain deleted, was unable to bind hsp90 and hsp70. Three separate regions of the steroid-binding domain were found to partially restore hsp90 and hsp70 binding to the d369-659 mutant protein. However, hsp binding was not abolished when these or other regions of the steroid binding domain were deleted individually. These findings indicate that hsp90 and hsp70 both bind to the steroid-binding domain of the receptor through interactions at multiple locations or through some structural quality that is distributed throughout this region of the protein.