Habitat and relative abundance of fishes in small rivers in eastern Thailand

Total relative abundance of fish and species richness at 95 sites in small rivers varied significantly with physicochemical factors. Species richness was negatively and positively related with pH and dissolved oxygen, respectively. Relative abundance varied inversely with discharge and ambient ammonia and, directly with depth, substratum, ambient oxygen and alkalinity. Fish were represented by 62 species, the most common being Rasbora paviei, Puntius binotatus and Channa gachua. Canonical correspondence analysis related species and their relative abundances with eight environmental variables into four groups. The most species-rich group was associated with approximately average values for the significant variables. The group with the fewest species was associated with high oxygen and low ammonia and alkalinity. The other two groups had similar numbers of species, one being associated with high ammonia and alkalinity and low oxygen. Species in the other group were found at locations where rivers were relatively wide with comparatively high oxygen and low ammonia concentrations.     

Selection and Evaluation of Probiotic and Functional Characteristics of Autochthonous Lactic Acid Bacteria Isolated from Fermented Wheat Flour Dough Babroo

Probiotics and Antimicrobial Proteins - The present study aimed to isolate and identify the potential probiotic lactic acid bacteria (LAB) from traditionally fermented wheat flour dough known as...     

Principal Component Analysis of Stimulatory Effect of Synbiotic Combination of Indigenous Probiotic and Inulin on Antioxidant Activity of Soymilk

Probiotics and Antimicrobial Proteins - The present study aimed to screen the indigenous probiotic cultures for their effect on total phenolic contents (TPC) and associated antioxidant activities...     

Statistical assessment of DNA extraction methodology for culture-independent analysis of microbial community associated with diverse environmental samples

Cost-effectiveness, quality, time-effectiveness and ease of the methodology are the most crucial factors in isolating quality DNA from wide variety of samples. Thus, research efforts focusing on the development of an efficient DNA extraction protocol is the need of the hour. The present study therefore, focuses on development of an efficient, rapid and free of inhibitory substances based methodology for extracting metagenomic DNA from diverse environmental samples viz. anaerobic biogas digesta, ruminant stomach, human feces, soil, and microbial starter cultures used for preparation of fermented food. PCR–DGGE based analysis and quality metagenomic library preparation, using DNA extraction methodology, validates the developed protocol. The developed protocol is cost effective, capable of isolating DNA from small sample size (100–1000 µl), time efficient (1.5–2.0 h protocol) and results in significantly higher DNA yield (4–8 times increased yield) when compared to previously available DNA extraction method and a commercial DNA extraction kit. The DNA extracted from the samples using different protocols was evaluated based on its ability to identify diverse microbial species using PCR–DGGE profiles targeting variable region within the 16S rRNA gene. The results of microbial community analysis revealed comparability of the developed protocol to commercial kits, in effectively identifying dominant representatives of the microbial community in different samples. Using the DNA extracted from the presented methodology, metagenomic libraries were prepared, which were found suitable for sequencing on Illumina platform.