Knock-down of protein phosphatase 2A subunit B’γ promotes phosphorylation of CALRETICULIN 1 in Arabidopsis thaliana

Different types of plant pathogens may cause enormous losses in agriculture and also have an ecological impact in the nature. On molecular level, disease resistance is acquired through the action of tightly interconnected signaling pathways that may induce highly specific immune reactions in plant cells. Controlled protein dephosphorylation through protein phosphatase 2A activity is emerging as a crucial mechanism that regulates diverse signaling events in plants. PP2A is predominantly trimeric, and consists of a catalytic subunit, a scaffold subunit A, and a variable regulatory subunit B, which determines the target specificity of the PP2A holoenzyme.¹ Recently, we uncovered a specific role for a regulatory subunit B’γ of PP2A as a negative regulator of immune reactions in Arabidopsis thaliana (hereafter Arabidopsis).² Knock-down pp2a-b’γ mutants show constitutive activation of defense related genes, imbalanced antioxidant metabolism and premature disintegration of chloroplasts upon ageing. Proteomic analysis of soluble leaf extracts further revealed that the constitutive defense response in pp2a-b’γ leaves associates with increased levels of Cu/Zn superoxide dismutase, aconitase as well as components of the methionine-salvage pathway, suggesting PP2A-B’γ modulates methionine metabolism in leaves.     

PROTON GRADIENT REGULATION5 Is Essential for Proper Acclimation of Arabidopsis Photosystem I to Naturally and Artificially Fluctuating Light Conditions

In nature, plants are challenged by constantly changing light conditions. To reveal the molecular mechanisms behind acclimation to sometimes drastic and frequent changes in light intensity, we grew Arabidopsis thaliana under fluctuating light conditions, in which the low light periods were repeatedly interrupted with high light peaks. Such conditions had only marginal effect on photosystem II but induced damage to photosystem I (PSI), the damage being most severe during the early developmental stages. We showed that PROTON GRADIENT REGULATION5 (PGR5)-dependent regulation of electron transfer and proton motive force is crucial for protection of PSI against photodamage, which occurred particularly during the high light phases of fluctuating light cycles. Contrary to PGR5, the NAD(P)H dehydrogenase complex, which mediates cyclic electron flow around PSI, did not contribute to acclimation of the photosynthetic apparatus, particularly PSI, to rapidly changing light intensities. Likewise, the Arabidopsis pgr5 mutant exhibited a significantly higher mortality rate compared with the wild type under outdoor field conditions. This shows not only that regulation of PSI under natural growth conditions is crucial but also the importance of PGR5 in PSI protection.     

Complex phenotypic profiles leading to ozone sensitivity in Arabidopsis thaliana mutants

Genetically tractable model plants offer the possibility of defining the plant O₃ response at the molecular level. To this end, we have isolated a collection of ozone (O₃)-sensitive mutants of Arabidopsis thaliana . Mutant phenotypes and genetics were characterized. Additionally, parameters associated with O₃ sensitivity were analysed, including stomatal conductance, sensitivity to and accumulation of reactive oxygen species, antioxidants, stress gene-expression and the accumulation of stress hormones. Each mutant has a unique phenotypic profile, with O₃ sensitivity caused by a unique set of alterations in these systems. O₃ sensitivity in these mutants is not caused by gross deficiencies in the antioxidant pathways tested here. The rcd3 mutant exhibits misregulated stomata. All mutants exhibited changes in stress hormones consistent with the known hormonal roles in defence and cell death regulation. One mutant, dubbed re-8 , is an allele of the classic leaf development mutant reticulata and exhibits phenotypes dependent on light conditions. This study shows that O₃ sensitivity can be determined by deficiencies in multiple interacting plant systems and provides genetic evidence linking these systems.     

Comparative analysis of leaf-type ferredoxin-NADP+ oxidoreductase isoforms in Arabidopsis thaliana

Physiological roles of the two distinct chloroplast-targeted ferredoxin-NADP⁺ oxidoreductase (FNR) isoforms in Arabidopsis thaliana were studied using T-DNA insertion line fnr1 and RNAi line fnr2 . In fnr2 FNR1 was present both as a thylakoid membrane-bound form and as a soluble protein, whereas in fnr1 the FNR2 protein existed solely in soluble form in the stroma. The fnr2 plants resembled fnr1 in having downregulated photosynthetic properties, expressed as low chlorophyll content, low accumulation of photosynthetic thylakoid proteins and reduced carbon fixation rate when compared with wild type (WT). Under standard growth conditions the level of F₀'rise' and the amplitude of the thermoluminescence afterglow (AG) band, shown to correlate with cyclic electron transfer (CET), were reduced in both fnr mutants. In contrast, when plants were grown under low temperatures, both fnr mutants showed an enhanced rate of CET when compared with the WT. These data exclude the possibility that distinct FNR isoforms feed electrons to specific CET pathways. Nevertheless, the fnr2 mutants had a distinct phenotype upon growth at low temperature. The fnr2 plants grown at low temperature were more tolerant against methyl viologen (MV)-induced cell death than fnr1 and WT. The unique tolerance of fnr2 plants grown at low temperature to oxidative stress correlated with an increased level of reduced ascorbate and reactive oxygen species (ROS) scavenging enzymes, as well as with a scarcity in the accumulation of thylakoid membrane protein complexes, as compared with fnr1 and WT. These results emphasize a critical role for FNR2 in the redistribution of electrons to various reducing pathways, upon conditions that modify the photosynthetic capacity of the plant.     

Steady-State Phosphorylation of Light-Harvesting Complex II Proteins Preserves Photosystem I under Fluctuating White Light

According to the “state transitions” theory, the light-harvesting complex II (LHCII) phosphorylation in plant chloroplasts is essential to adjust the relative absorption cross section of photosystem II (PSII) and PSI upon changes in light quality. The role of LHCII phosphorylation upon changes in light intensity is less thoroughly investigated, particularly when changes in light intensity are too fast to allow the phosphorylation/dephosphorylation processes to occur. Here, we demonstrate that the Arabidopsis (Arabidopsis thaliana) stn7 (for state transition7) mutant, devoid of the STN7 kinase and LHCII phosphorylation, shows a growth penalty only under fluctuating white light due to a low amount of PSI. Under constant growth light conditions, stn7 acquires chloroplast redox homeostasis by increasing the relative amount of PSI centers. Thus, in plant chloroplasts, the steady-state LHCII phosphorylation plays a major role in preserving PSI upon rapid fluctuations in white light intensity. Such protection of PSI results from LHCII phosphorylation-dependent equal distribution of excitation energy to both PSII and PSI from the shared LHCII antenna and occurs in cooperation with nonphotochemical quenching and the proton gradient regulation5-dependent control of electron flow, which are likewise strictly regulated by white light intensity. LHCII phosphorylation is concluded to function both as a stabilizer (in time scales of seconds to minutes) and a dynamic regulator (in time scales from tens of minutes to hours and days) of redox homeostasis in chloroplasts, subject to modifications by both environmental and metabolic cues. Exceeding the capacity of LHCII phosphorylation/dephosphorylation to balance the distribution of excitation energy between PSII and PSI results in readjustment of photosystem stoichiometry.Plant acclimation to different quantities and qualities of light has been extensively investigated. The light quality experiments have usually concerned the red/blue and far-red light acclimation strategies, which have been closely related to the state transitions and the phosphorylation of the light-harvesting complex II (LHCII) proteins, Lhcb1 and Lhcb2, by the state transition7 (STN7) kinase (Allen, 2003; Bellafiore et al., 2005; Bonardi et al., 2005; Tikkanen et al., 2006; Rochaix, 2007). Such studies on acclimation to different qualities of light have uncovered key mechanisms required for the maintenance of photosynthetic efficiency in dense populations and canopies (Dietzel et al., 2008). However, the role of LHCII phosphorylation under fluctuations in the quantity of white light has been scarcely investigated. Light conditions in natural environments may be very complex with respect to the quantity of white light, which constantly fluctuates both in short- and long-term durations (Smith, 1982; Külheim et al., 2002). Thus, the acclimation strategies to natural environments must concomitantly meet the challenges of both high- and low-light acclimation. Changing cloudiness, for example, would initiate both the high-light and low-light acclimation signals in the time scale of minutes and hours, whereas the movements of leaves in the wind or the rapid movement of clouds would initiate even more frequent light acclimation signals. The kinetics of reversible LHCII phosphorylation is far too slow to cope with rapid environmental changes.The phosphorylation level of LHCII proteins in the thylakoid membrane is regulated by both the STN7 kinase and the counteracting PPH1/TAP38 phosphatase (Pribil et al., 2010; Shapiguzov et al., 2010). No definite results are available about regulation of the PPH1/TAP38 phosphatase, but the STN7 kinase is strongly under redox regulation (Lemeille et al., 2009) and controls the phosphorylation level of LHCII proteins under varying white light intensities as well as according to chloroplast metabolic cues, as described already decades ago (Fernyhough et al., 1983; Rintamäki et al., 2000; Hou et al., 2003). So far, research on the role of the STN7 kinase and LHCII phosphorylation in the light acclimation of higher plants has heavily focused on reversible LHCII phosphorylation and concomitant state transitions. The state 1-to-state 2 transition, by definition, means the phosphorylation of LHCII proteins, their detachment from PSII in grana membranes, and migration to the stroma membranes to serve in the collection of excitation energy to PSI (Fork and Satoh, 1986; Williams and Allen, 1987; Wollman, 2001; Rochaix, 2007; Kargul and Barber, 2008; Murata, 2009; Lemeille et al., 2010; Minagawa, 2011). Concomitantly, the absorption cross section of PSII decreases and that of PSI increases (Canaani and Malkin, 1984; Malkin et al., 1986; Ruban and Johnson, 2009). Indeed, state transitions have been well documented when different qualities (blue/red and far red) of light, preferentially exciting either PSII or PSI, have been applied.Different from state transitions, the white light intensity-dependent reversible LHCII phosphorylation does not result in differential excitation of the two photosystems (Tikkanen et al., 2010). Instead, both photosystems remain nearly equally excited independently whether the LHCII proteins are heavily phosphorylated or strongly dephosphorylated. Moreover, it is worth noting that the different qualities of light generally used to induce reversible LHCII phosphorylation and state transitions (blue/red and far-red lights) have usually been of very low intensity (for review, see Haldrup et al., 2001), and apparently, minimal protonation of the lumen takes place under such illumination conditions. Yet another difference between induction of LHCII protein phosphorylation by different qualities of light or different quantities of white light concerns the concomitant induction of PSII core protein phosphorylation. In the former case, the level of PSII core protein phosphorylation follows the phosphorylation pattern of LHCII proteins, whereas under different quantities of white light, the phosphorylation behavior of PSII core and LHCII proteins is the opposite (Tikkanen et al., 2008b).To gain a more comprehensive understanding of the physiological role of white light-induced changes in LHCII protein phosphorylation, we have integrated Arabidopsis (Arabidopsis thaliana) LHCII phosphorylation with other light-dependent regulatory modifications of light harvesting and electron transfer in the thylakoid membrane, which include the nonphotochemical quenching of excitation energy (for review, see Niyogi, 1999; Horton and Ruban, 2005; Barros and Kühlbrandt, 2009; de Bianchi et al., 2010; Jahns and Holzwarth, 2012; Ruban et al., 2012) and the photosynthetic control of electron transfer by the cytochrome b₆f (Cytb6f) complex (Rumberg and Siggel, 1969; Witt, 1979; Tikhonov et al., 1981; Bendall, 1982; Nishio and Whitmarsh, 1993; Joliot and Johnson, 2011; Suorsa et al., 2012; for review, see Foyer et al., 1990, 2012), both strongly dependent on lumenal protonation.It is demonstrated that the steady-state LHCII phosphorylation is particularly important under rapidly fluctuating light (FL) conditions. This ensures equal energy distribution to both photosystems, prevents the accumulation of electrons in the intersystem electron transfer chain (ETC), eliminates perturbations in chloroplast redox balance, and maintains PSI functionality upon rapid fluctuations in white light intensity.     

Implication of chlorophyll biosynthesis on chloroplast-to-nucleus retrograde signaling

The biogenesis and function of chloroplast are controlled both by anterograde mechanisms involving nuclear-encoded proteins targeted to chloroplast and by retrograde signals from plastid to nucleus contributing to regulation of nuclear gene expression. A number of experimental evidences support the implication of chlorophyll biosynthesis intermediates on the retrograde signaling, albeit an earlier-postulated direct link between accumulation of chlorophyll intermediates and changes in nuclear gene expression has recently been challenged. By characterization of Arabidopsis mutants lacking the chloroplast localized NADPH-thioredoxin reductase (NTRC) we have recently proposed that imbalanced activity of chlorophyll biosynthesis in developing cells modifies the chloroplast signals leading to alterations in nuclear gene expression. These signals appear to initiate from temporal perturbations in the flux through the pathway from protoporphyrin to protochlorophyllide rather than from the accumulation of a single intermediate of the tetrapyr-role pathway.Key words: chloroplast biogenesis, NADPH-thioredoxin reductase, porphyrins, ROS, signaling, tetrapyrrole, thioredoxinOrchestrated regulation of gene expression in the nucleus and plastids is crucial for the proper biogenesis of the organelle during the development and for the acclimation of plants to environmental cues. Multiple potential candidates for initiating plastidial signals have been recognized, including intermediates of the tetrapyrrole biosynthetic pathway, redox state of chloroplast electron transfer components and reactive oxygen species (ROS). These multiple signaling pathways are likely to interact with each others, resulting in a complex signaling network between plastid and nucleus (reviewed in ref. ¹).     

Role of Thylakoid ATP/ADP Carrier in Photoinhibition and Photoprotection of Photosystem II in Arabidopsis

The chloroplast thylakoid ATP/ADP carrier (TAAC) belongs to the mitochondrial carrier superfamily and supplies the thylakoid lumen with stromal ATP in exchange for ADP. Here, we investigate the physiological consequences of TAAC depletion in Arabidopsis (Arabidopsis thaliana). We show that the deficiency of TAAC in two T-DNA insertion lines does not modify the chloroplast ultrastructure, the relative amounts of photosynthetic proteins, the pigment composition, and the photosynthetic activity. Under growth light conditions, the mutants initially displayed similar shoot weight, but lower when reaching full development, and were less tolerant to high light conditions in comparison with the wild type. These observations prompted us to study in more detail the effects of TAAC depletion on photoinhibition and photoprotection of the photosystem II (PSII) complex. The steady-state phosphorylation levels of PSII proteins were not affected, but the degradation of the reaction center II D1 protein was blocked, and decreased amounts of CP43-less PSII monomers were detected in the mutants. Besides this, the mutant leaves displayed a transiently higher nonphotochemical quenching of chlorophyll fluorescence than the wild-type leaves, especially at low light. This may be attributed to the accumulation in the absence of TAAC of a higher electrochemical H⁺ gradient in the first minutes of illumination, which more efficiently activates photoprotective xanthophyll cycle-dependent and independent mechanisms. Based on these results, we propose that TAAC plays a critical role in the disassembly steps during PSII repair and in addition may balance the trans-thylakoid electrochemical H⁺ gradient storage.In plants, the chloroplast thylakoid membrane is the site of light-driven photosynthetic reactions coupled to ATP synthesis. There are four major protein complexes involved in these reactions, namely, PSI, PSII, the cytochrome b₆f, and the H⁺-translocating ATP synthase (for review, see Nelson and Ben-Shem, 2004). The photosystems and the cytochrome b₆f complex also contain redox components and pigments bound to protein subunits. Their synthesis, assembly, optimal function, and repair during normal development and stress require a number of transport and regulatory mechanisms. In this context, the water-oxidizing PSII complex composed of more than 25 integral and peripheral proteins attracts special attention since its reaction center D1 subunit is degraded and replaced much faster than the other subunits under excess and even growth light conditions (for review, see Aro et al., 2005). Thus, the D1 protein turnover is the major event in the repair cycle of the PSII complex and occurs subsequently to the inactivation of PSII electron transport. D1 degradation is most likely performed by thylakoid FtsH and Deg proteases, operating on both sides of the thylakoid membrane (Lindahl et al., 2000; Haussühl et al., 2001; Silva et al., 2003; Kapri-Pardes et al., 2007). The PSII repair cycle is regulated by reversible phosphorylation of several core subunits (Tikkanen et al., 2008).ATP is produced as a result of the light-driven photosynthetic reactions in the thylakoid membrane and mainly is utilized in the carbon fixation reactions occurring in the soluble stroma. Besides this, ATP also drives several energy-dependent processes occurring on the stromal side of the thylakoid membrane, including phosphorylation, folding, import, and degradation of proteins. Furthermore, experimental evidence for ATP transport across the thylakoid membrane and nucleotide metabolism inside the lumenal space has been reported (Spetea et al., 2004; for review, see Spetea and Thuswaldner, 2008; Spetea and Schoefs, 2010). The protein responsible for the thylakoid ATP transport activity has been identified in Arabidopsis (Arabidopsis thaliana) as the product of the At5g01500 gene and functionally characterized in Escherichia coli as an ATP/ADP exchanger (Thuswaldner et al., 2007). This protein is homologous to the extensively studied bovine mitochondrial ADP/ATP carrier and therefore has been named thylakoid ATP/ADP carrier (TAAC). In the same report, it has been demonstrated that TAAC transports ATP from stroma to lumen in exchange for ADP, as based on radioactive assays using thylakoids isolated from Arabidopsis wild-type plants and a T-DNA insertion knockout line (named taac). Furthermore, TAAC was shown to be mainly expressed in photosynthetic tissues with an up-regulation during greening, senescence, and stress (e.g. high light) conditions, implying a physiological role during thylakoid biogenesis and turnover.The ATP translocated by TAAC across the thylakoid membrane is converted to GTP by the lumenal nucleoside diphosphate kinase III; GTP can then be bound and hydrolyzed to GDP and inorganic phosphate by the PsbO protein, a lumenal extrinsic subunit of the PSII complex (Spetea et al., 2004; Lundin et al., 2007a). The anion transporter 1 from Arabidopsis has been proposed to export to the stroma the phosphate generated during nucleotide metabolism in the thylakoid lumen (Ruiz Pavón et al., 2008). Between the two PsbO isoforms in Arabidopsis, it has recently been reported that PsbO2 plays an essential role in D1 protein turnover during high light stress and that it has a higher GTPase activity than PsbO1 (Lundin et al., 2007b, 2008; Allahverdiyeva et al., 2009). The precise mechanism of PsbO2-mediated PSII repair is not known. Nevertheless, the requirement of GTP for efficient proteolytic removal of the D1 protein during repair of photoinactivated PSII was previously reported (Spetea et al., 1999). Furthermore, it has been proposed that the PsbO2 type of PSII complexes undergo more efficient repair. This has been attributed to the PsbO2-mediated GTPase activity that induces PsbO2 release from the complex, thus facilitating the next steps in the repair process, namely, dissociation of the CP43 subunit and proteolysis of the D1 subunit (Lundin et al., 2007b, 2008).TAAC may represent the missing link between ATP synthesis on the stromal side of the thylakoid membrane and nucleotide-dependent reactions in the lumenal space. The taac mutant provides an interesting tool to study whether there are any regulatory networks between the activity of TAAC and PSII repair. Based on phenotypic characterization of two different T-DNA insertion lines of the TAAC gene, we report in this article that the PSII repair cycle is malfunctioning in the absence of TAAC and that the thermal photoprotection is faster activated during light stress.     

Dithiol oxidant and disulfide reductant dynamically regulate the phosphorylation of light-harvesting complex II proteins in thylakoid membranes

Light-induced phosphorylation of light-harvesting chlorophyll a/b complex II (LHCII) proteins in plant thylakoid membranes requires an activation of the LHCII kinase via binding of plastoquinol to cytochrome b(6)f complex. However, a gradual down-regulation of LHCII protein phosphorylation occurs in higher plant leaves in vivo with increasing light intensity. This inhibition is likely to be mediated by increasing concentration of thiol reductants in the chloroplast. Here, we have determined the components involved in thiol redox regulation of the LHCII kinase by studying the restoration of LHCII protein phosphorylation in thylakoid membranes isolated from high-light-illuminated leaves of pumpkin (Cucurbita pepo), spinach (Spinacia oleracea), and Arabidopsis. We demonstrate an experimental separation of two dynamic activities associated with isolated thylakoid membranes and involved in thiol regulation of the LHCII kinase. First, a thioredoxin-like compound, responsible for inhibition of the LHCII kinase, became tightly associated and/or activated within thylakoid membranes upon illumination of leaves at high light intensities. This reducing activity was completely missing from membranes isolated from leaves with active LHCII protein phosphorylation, such as dark-treated and low-light-illuminated leaves. Second, hydrogen peroxide was shown to serve as an oxidant that restored the catalytic activity of the LHCII kinase in thylakoids isolated from leaves with inhibited LHCII kinase. We propose a dynamic mechanism by which counteracting oxidizing and reducing activities exert a stimulatory and inhibitory effect, respectively, on the phosphorylation of LHCII proteins in vivo via a novel membrane-bound thiol component, which itself is controlled by the thiol redox potential in chloroplast stroma.