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1.
Brulc JM Yeoman CJ Wilson MK Berg Miller ME Jeraldo P Jindou S Goldenfeld N Flint HJ Lamed R Borovok I Vodovnik M Nelson KE Bayer EA White BA 《PloS one》2011,6(10):e25329
Background
The bovine rumen maintains a diverse microbial community that serves to break down indigestible plant substrates. However, those bacteria specifically adapted to degrade cellulose, the major structural component of plant biomass, represent a fraction of the rumen microbiome. Previously, we proposed scaC as a candidate for phylotyping Ruminococcus flavefaciens, one of three major cellulolytic bacterial species isolated from the rumen. In the present report we examine the dynamics and diversity of scaC-types both within and between cattle temporally, following a dietary switch from corn-silage to grass-legume hay. These results were placed in the context of the overall bacterial population dynamics measured using the 16S rRNA.Principal Findings
As many as 117 scaC-types were estimated, although just nineteen were detected in each of three rumens tested, and these collectively accounted for the majority of all types present. Variation in scaC populations was observed between cattle, between planktonic and fiber-associated fractions and temporally over the six-week survey, and appeared related to scaC phylogeny. However, by the sixth week no significant separation of scaC populations was seen between animals, suggesting enrichment of a constrained set of scaC-types. Comparing the amino-acid translation of each scaC-type revealed sequence variation within part of the predicted dockerin module but strong conservation in the N-terminus, where the cohesin module is located.Conclusions
The R. flavefaciens species comprises a multiplicity of scaC-types in-vivo. Enrichment of particular scaC-types temporally, following a dietary switch, and between fractions along with the phylogenetic congruence suggests that functional differences exist between types. Observed differences in dockerin modules suggest at least part of the functional heterogeneity may be conferred by scaC. The polymorphic nature of scaC enables the relative distribution of R. flavefaciens strains to be examined and represents a gene-centric approach to investigating the intraspecific adaptation of an important specialist population. 相似文献2.
Jindou S Soda A Karita S Kajino T Béguin P Wu JH Inagaki M Kimura T Sakka K Ohmiya K 《The Journal of biological chemistry》2004,279(11):9867-9874
The cellulosome components are assembled into the cellulosome complex by the interaction between one of the repeated cohesin domains of a scaffolding protein and the dockerin domain of an enzyme component. We prepared five recombinant cohesin polypeptides of the Clostridium thermocellum scaffolding protein CipA, two dockerin polypeptides of C. thermocellum Xyn11A and Xyn10C, four cohesin polypeptides of Clostridium josui CipA, and two dockerin polypeptides of C. josui Aga27A and Cel8A, and qualitatively and quantitatively examined the cohesin-dockerin interactions within C. thermocellum and C. josui, respectively, and the species specificity of the cohesin-dockerin interactions between these two bacteria. Surface plasmon resonance (SPR) analysis indicated that there was a certain selectivity, with a maximal 34-fold difference in the K(D) values, in the cohesin-dockerin interactions within a combination of C. josui, although this was not detected by qualitative analysis. Affinity blotting analysis suggested that there was at least one exception to the species specificity in the cohesin-dockerin interactions, although species specificity was generally conserved among the cohesin and dockerin polypeptides from C. thermocellum and C. josui, i.e. the dockerin polypeptides of C. thermocellum Xyn11A exceptionally bound to the cohesin polypeptides from C. josui CipA. SPR analysis confirmed this exceptional binding. We discuss the relationship between the species specificity of the cohesin-dockerin binding and the conserved amino acid residues in the dockerin domains. 相似文献
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Sakai Kiyota Mochizuki Mai Yamada Miyuki Shinzawa Yuta Minezawa Miho Kimoto Saran Murata Shunsuke Kaneko Yuhei Ishihara Saaya Jindou Sadanari Kobayashi Tetsuo Kato Masashi Shimizu Motoyuki 《Applied microbiology and biotechnology》2017,101(8):3237-3245
Applied Microbiology and Biotechnology - A β-1,4-mannanase, termed AoMan134A, that belongs to the GH 134 family was identified in the filamentous fungus Aspergillus oryzae. Recombinant... 相似文献
4.
Ezer A Matalon E Jindou S Borovok I Atamna N Yu Z Morrison M Bayer EA Lamed R 《Journal of bacteriology》2008,190(24):8220-8222
The rumen bacterium Ruminococcus albus binds to and degrades crystalline cellulosic substrates via a unique cellulose degradation system. A unique family of carbohydrate-binding modules (CBM37), located at the C terminus of different glycoside hydrolases, appears to be responsible both for anchoring these enzymes to the bacterial cell surface and for substrate binding. 相似文献
5.
Tal Burstein Sadanari Jindou Felix Frolow Edward A. Bayer Raphael Lamed 《FEBS letters》2009,583(5):879-45040
Clostridium thermocellum cellulase 9I (Cel9I) is a non-cellulosomal tri-modular enzyme, consisting of a family-9 glycoside hydrolase (GH9) catalytic module and two family-3 carbohydrate-binding modules (CBM3c and CBM3b). The presence of CBM3c was previously shown to be essential for activity, however the mechanism by which it functions is unclear. We expressed the three recombinant modules independently in Escherichia coli and examined their interactions. Non-denaturing gel electrophoresis, isothermal titration calorimetry, and affinity purification of the GH9-CBM3c complex revealed a specific non-covalent binding interaction between the GH9 module and CBM3c. Their physical association was shown to recover 60-70% of the intact Cel9I endoglucanase activity.
Structured summary:
MINT-6946626:Cel9I (uniprotkb:Q02934) and Cel9I (uniprotkb:Q02934) bind (MI:0407) by comigration in non-denaturing gel electrophoresis (MI:0404)MINT-6946649:Cel9I (uniprotkb:Q02934) and Cel9I (uniprotkb:Q02934) bind (MI:0407) by molecular sieving (MI:0071)MINT-6946687:Cel9I (uniprotkb:Q02934) and Cel9I (uniprotkb:Q02934) bind (MI:0407) by isothermal titration calorimetry (MI:0065)MINT-6946706:Cel9I (uniprotkb:Q02934) binds (MI:0407) to Cel9I (uniprotkb:Q02934) by pull down (MI:0096) 相似文献6.
Yujuan Liu Xiaoyan Liu Jindou Huang Jianyong Liu Shijie Xie Yujun Zheng 《Journal of molecular modeling》2016,22(8):182
Fused ring oligothiophenes and their derivatives, as active organic semiconductors, are widely used in electronic devices. The influence of molecular conjunction length on reorganization energy, electronic coupling and charge mobility of two fused ring oligothiophenes are investigated theoretically. The charge mobility of 2, 5-di(thiophen-2-yl)thieno [3, 2-b]thiophene (T?T2?T) with longer molecular conjunction length is 0.226 cm2V?1s?1, which is nearly 3 times larger than that of 2, 2-bithieno[3, 2-b]thiophene (T2?T2) as 0.085 cm2V?1s?1. The investigation will provide a new perspective to design high mobility organic semiconductors. 相似文献
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Xu Xiaohong Qian Jing Qin Lingsong Li Jindou Xue Cong Ding Jiaxin Wang Weiqi Ding Wei Yin Renfu Jin Ningyi Ding Zhuang 《中国病毒学》2020,35(4):455-467
Newcastle disease virus(NDV) and H9N2 subtype Avian influenza virus(AIV) are two notorious avian respiratory pathogens that cause great losses in the poultry industry. Current inactivated commercial vaccines against NDV and AIV have the disadvantages of inadequate mucosal responses, while an attenuated live vaccine bears the risk of mutation.Dendritic cell(DC) targeting strategies are attractive for their potent mucosal and adaptive immune-stimulating ability against respiratory pathogens. In this study, DC-binding peptide(DCpep)-decorated chimeric virus-like particles(cVLPs),containing NDV haemagglutinin–neuraminidase(HN) and AIV haemagglutinin(HA), were developed as a DC-targeting mucosal vaccine candidate. DCpep-decorated cVLPs activated DCs in vitro, and induced potent immune stimulation in chickens, with enhanced secretory immunoglobulin A(sIgA) secretion and splenic T cell differentiation. 40 μg cVLPs can provide full protection against the challenge with homologous, heterologous NDV strains, and AIV H9N2. In addition,DCpep-decorated cVLPs could induce a better immune response when administered intranasally than intramuscularly, as indicated by robust s IgA secretion and a reduced virus shedding period. Taken together, this chimericVLPs are a promising vaccine candidate to control NDV and AIV H9N2 and a useful platform bearing multivalent antigens. 相似文献
10.
Margret E. Berg Miller Dionysios A. Antonopoulos Marco T. Rincon Mark Band Albert Bari Tatsiana Akraiko Alvaro Hernandez Jyothi Thimmapuram Bernard Henrissat Pedro M. Coutinho Ilya Borovok Sadanari Jindou Raphael Lamed Harry J. Flint Edward A. Bayer Bryan A. White 《PloS one》2009,4(8)