Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135

Background

Epistatic interactions of multiple single nucleotide polymorphisms (SNPs) are now believed to affect individual susceptibility to common diseases. The detection of such interactions, however, is a challenging task in large scale association studies. Ant colony optimization (ACO) algorithms have been shown to be useful in detecting epistatic interactions.

Findings

AntEpiSeeker, a new two-stage ant colony optimization algorithm, has been developed for detecting epistasis in a case-control design. Based on some practical epistatic models, AntEpiSeeker has performed very well.

Conclusions

AntEpiSeeker is a powerful and efficient tool for large-scale association studies and can be downloaded from http://nce.ads.uga.edu/~romdhane/AntEpiSeeker/index.html.     

Thermogenesis of three species of Arum from Crete

Inflorescences of arum lilies have a three-part spadix with a scent-producing, sterile appendix above two bands of fertile male and female florets. The appendix and male florets are thermogenic, but with different temporal patterns. Heat-production was measured in Arum concinnatum , A. creticum and A. idaeum . The male florets of A. concinnatum showed a 3 d continuous episode of thermogenesis with three waves, and the appendix warmed in a single, 6 h episode. Maximum fresh-mass-specific CO₂ production rate was 0.17  µ mol s⁻¹ g⁻¹ to achieve a 10.9 °C temperature elevation by the appendix, and 0.92  µ mol s⁻¹ g⁻¹ to achieve a 4.8 °C elevation by male florets. Reversible, physiological temperature regulation was not evident in either tissue. Respiration increased with tissue temperatures with Q₁₀ values of 1.8–3.9, rather than less than 1.0 as occurs in thermoregulatory flowers. Experimental step changes in temperature of appendix and male floret tissues also failed to show thermoregulatory responses. The patterns of thermogenesis therefore appear to be fixed by the temporal sequence of blooming. Thermogenesis in the alpine species, A. creticum and A. idaeum , was significantly lower than in the lowland A. concinnatum , possibly related to difficulty in raising floral temperature in their cold and windy habitat.     

Detection Dogs: An Effective Technique for Bush Dog Surveys

ABSTRACT Detailed ecological data on the bush dog (Speothos venaticus) have been lacking, since standard field techniques, such as camera traps, have had little success recording their presence. This study eliminates dependence on visitation rate and switches the focus to locating evidence (e.g., olfactory) associated with the species’ natural behavior and movement patterns. Over a 3-month period, a detection dog located multiple (n = 11, 4 confirmed and 7 potential) bush dog areas in Upper Paraná Atlantic Forest of Misiones Argentina. These positive results demonstrate that detection dogs can provide species-specific data on the bush dog despite the rugged terrain and dense forest vegetation they may occupy. The ecological data collected using this technique allow effective conservation strategies to be developed, wildlife corridors and biological crossings to be designed, and species distributions to be examined.     

The oxygen supply to thermogenic flowers

Thermogenic flowers produce heat by intense respiration, and the rates of O₂ consumption (?o₂) in some species can exceed those of all other tissues of plants and most animals. By exposing intact flowers to a range of O₂ pressures (Po₂) and measuring ?o₂, we demonstrate that the highest respiration rates exceed the capacity of the O₂ diffusive pathway and become diffusion limited in atmospheric air. The male florets on the inflorescence of Arum concinnatum have the highest known mass‐specific ?o₂ and can be severely diffusion limited. Intact spadices of Japanese skunk cabbage Symplocarpus renifolius are diffusion limited in air only when ?o₂ is maximal, but not at lower levels. True flowers of the sacred lotus Nelumbo nucifera and the appendix of Arum concinnatum are never diffusion limited in air. ?o₂ – Po₂ curves are evaluated quantitatively with the ‘Regulation Index’, a new tool to measure dependence of ?o₂ on ambient Po₂, as well as the conventional ‘Critical Po₂’. The study also includes measurements of Po₂ within thermogenic tissues with O₂‐sensitive fibre optics, and reveals that the diffusion pathway is complicated and that O₂ can be provided not only from the surface of the tissues but also from the pith of the flower's peduncle.