Gibberellin-regulated phosphatidylcholine biosynthesis in suspension cultures of Apium graveolens

Recent studies with mammalian tissues have shown thatphosphatidylcholine (PC) plays a key role in signal transduction mechanismsinvolved in cell proliferation and differentiation. This investigation attemptsto show if PC has a role in gibberellin-stimulated plant signal transduction.With respect to cell differentiation, GA₃-treatment caused an overallincrease in the elongation ratio exhibited by the cells. The effects ofGA₃ on the biosynthetic route of PC were investigated. Carbon fluxthrough the CDP-base pathway was significantly reduced upon GA₃treatment. Whereas, radiolabelling studies with tritiated methionine showed aGA₃ concentration-dependent increase in the flux of intermediatesthrough the methyltransferase pathway indicating a possible link betweenmethyltransferase-derived PC and cell differentiation.     

Accurate Distinction of Pathogenic from Benign CNVs in Mental Retardation

Copy number variants (CNVs) have recently been recognized as a common form of genomic variation in humans. Hundreds of CNVs can be detected in any individual genome using genomic microarrays or whole genome sequencing technology, but their phenotypic consequences are still poorly understood. Rare CNVs have been reported as a frequent cause of neurological disorders such as mental retardation (MR), schizophrenia and autism, prompting widespread implementation of CNV screening in diagnostics. In previous studies we have shown that, in contrast to benign CNVs, MR-associated CNVs are significantly enriched in genes whose mouse orthologues, when disrupted, result in a nervous system phenotype. In this study we developed and validated a novel computational method for differentiating between benign and MR-associated CNVs using structural and functional genomic features to annotate each CNV. In total 13 genomic features were included in the final version of a Naïve Bayesian Tree classifier, with LINE density and mouse knock-out phenotypes contributing most to the classifier''s accuracy. After demonstrating that our method (called GECCO) perfectly classifies CNVs causing known MR-associated syndromes, we show that it achieves high accuracy (94%) and negative predictive value (99%) on a blinded test set of more than 1,200 CNVs from a large cohort of individuals with MR. These results indicate that this classification method will be of value for objectively prioritizing CNVs in clinical research and diagnostics.     

Phosphatidylcholine biosynthesis in celery cell suspension cultures with altered sterol compositions

Cell suspension cultures of celery were treated with the plant growth regulator, paclobutrazol. Lipid analysis revealed that use of this xenobiotic had little effect on the quantity or acyl quality of the major phospholipid classes or on the actual amounts of free sterol present in the cell. It did however, cause dramatic changes in the free sterol profile exhibited by treated cultures. In this respect, an increase in 14α-methylsterols was observed.
The synthesis of phosphatidylcholine in celery cell suspension cultures with altered free sterol compositions was studied using two radiolabelled biosynthetic precursors, [³H-methyl]choline and [³H-methyl]methionine. The studies showed that the rate of phosphatidylcholine biosynthesis via the CDP-base pathway proceeded at a slower rate in paclobutrazol treated cultures. Accumulation of label phosphocholine was observed arising from reduced CTP:cholinephosphatecytidylyltransferase activity. In contrast, phosphatidylcholine biosynthesis via the sequential methylation of ethanolamine derivatives appeared to be enhanced in cells that had an unusually high 14α-methylsterol content. From these investigations it may be postulated that the biosynthesis of phosphatidylcholine in Apium graveolens suspension cultures may be regulated by membrane sterol composition.