Midwater biomass profiles over the Madeira Abyssal Plain and the contribution of copepods

Biomass profiles for plankton and micronekton throughout the water column at a site on the Madeira Abyssal Plain, position 31° 17 N 25° 24 W, depth 5 440 m, are described. Biomass declined exponentially with depth, > 80% of the plankton and > 95% of micronekton occured between 0–1000 m. The total biomass was low, ca 2 g dry weight below each m² of sea surface but this situation is probably not abnormal and reflects the paucity of biota at abyssal depths. Plankton and micronekton profiles were strikingly similar at depths below 1700 m. In contrast to previous observations there was no dramatic increase in biomass just above the bottom. Comparisons with previous data suggest that the processes controlling the distribution of biomass in the deep oceans are similar despite differences in overlying surface production. The most numerous planktonic group were copepods and the plankton biomass profiles mirror their abundance profiles. The proportion of dead: living copepods has been estimated for depths > 1500 m: the relative constancy of the proportions in midwater may be attributable to detritivory. Immediately above the bottom the proportion of carcases increased and the proportion of non calanoid copepods also increased. Total numbers of copepods increased markedly in a haul which hit the bottom, this may be due to a specialised population living very close to the sea bed.     

Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening

The kinetics of formation and of dissociation of open complexes (RPo) between Escherichia coli RNA polymerase (R) and the lambda PR promoter (P) have been studied as a function of temperature in the physiological range using the nitrocellulose filter binding assay. The kinetic data provide further evidence for the mechanism R + P in equilibrium I1 in equilibrium I2 in equilibrium RPo, where I1 and I2 are kinetically distinguishable intermediate complexes at this promoter which do not accumulate under the reaction conditions investigated. The overall second-order association rate constant (ka) increases dramatically with increasing temperature, yielding a temperature-dependent activation energy in the range 20 kcal (near 37 degrees C) to 40 kcal (near 13 degrees C) (1 kcal = 4.184 kJ). Both isomerization steps (I1----I2 and I2----RPo) appear to be highly temperature dependent. Except at low temperatures (less than 13 degrees C) the step I1----I2, which we attribute to a conformational change in the polymerase with a large negative delta Cp degrees value, is rate-limiting at the reactant concentrations investigated and hence makes the dominant contribution to the apparent activation energy of the pseudo first-order association reaction. The subsequent step I2----RPo, which we attribute to DNA melting, has a higher activation energy (in excess of 100 kcal) but only becomes rate-limiting at low temperature (less than 13 degrees C). The initial binding step R + P in equilibrium I1 appears to be in equilibrium on the time-scale of the isomerization reactions under all conditions investigated; the equilibrium constant for this step is not a strong function of temperature and is approximately 10(7) M-1 under the standard ionic conditions of the assay (40 mM-Tris . HCl (pH 8.0), 10 mM-MgCl2, 0.12 M-KC1). The activation energy of the dissociation reaction becomes increasingly negative at low temperatures, ranging from approximately -9 kcal near 37 degrees C to -30 kcal near 13 degrees C. Thermodynamic (van't Hoff) enthalpies delta H degrees of open complex formation consequently are large and temperature-dependent, increasing from approximately 29 to 70 kcal as the temperature is reduced from 37 to 13 degrees C. The corresponding delta Cp degrees value is approximately -2.4 kcal/deg. We propose that this large negative delta Cp degrees value arises primarily from the burial of hydrophobic surface in the conformational change (I1 in equilibrium I2) in RNA polymerase in the key second step of the mechanism.(ABSTRACT TRUNCATED AT 400 WORDS)     

Linkage disequilibrium between the FES, D15S127, and BLM loci in Ashkenazi Jews with Bloom syndrome.

Bloom syndrome (BS) is more common in the Ashkenazi Jewish than in any other population. Approximately 1 in 110 Ashkenazi Jews carries blm, the BS mutation. The locus mutated in BS, BLM, maps to chromosome subband 15q26.1, tightly linked to the proto-oncogene FES. We have investigated the basis for the increased frequency of blm in the Ashkenazim by genotyping polymorphic microsatellite loci tightly linked to BLM in affected and unaffected individuals from Ashkenazi Jewish and non-Ashkenazi populations. A striking association of the C3 allele at FES with blm (delta = .422; p = 5.52 x 10(-7)) and of the 145-bp and 147-bp alleles at D15S127 with blm (delta = .392 and delta = .483, respectively; p = 2.8 x 10(-5) and p = 5.4 x 10(-7), respectively) was detected in Ashkenazi Jews with BS. This linkage disequilibrium constitutes strong support for a founder-effect hypothesis: the chromosome in the hypothetical founder who carried blm also carried the C3 allele at FES and either the 145-bp or the 147-bp allele at D15S127.     

Aspects of the biology of Pantinonemertes californiensis,a high intertidal nemertean

I studied the distribution, feeding biology, and reproductive biology of Pantinonemertes californiensis, described as a semi-terrestrial nemertean, along the central California coast. At the sites used in this study, maximal tidal height is about 2 m, and P. californiensis typically occurred under boulders between 1.3 and 1.7 m tidal height. Worms fed primarily on the semi-terrestrial amphipod Traskorchestia traskiana. Distribution of nemerteans was similar to that of the prey, although prey extended higher on the beach than did the worms. Nemerteans were largest and most abundant at the site with highest abundance of T. traskiana and smallest and least abundant at the lowest prey abundance site. In laboratory feeding trials, nemerteans from the site with lowest prey abundance fed most readily. Non-reproductive nemerteans lived for at least a week when submerged in sea water; some prey died within a week of being submerged. Nemerteans only lived minutes when submerged in fresh water; 50% of prey lived 4.5 h. Eggs are approximately 90–100 μm in diameter and hundreds to thousands are shed per female. Larvae are planktonic and apparently planktotrophic, and are morphologically similar to other marine hoplonemertean larvae. At the sites studied life history characteristics of P. californiensis provided little evidence of adaptations to terrestrial life in these worms and were not helpful in elucidating the role of semi-terrestrial nemerteans in the evolution of terrestrial nemerteans.