Structural relatedness of lysis proteins from colicinogenic plasmids and icosahedral coliphages

The host-lysis-inducing functions of phi X174 protein E and MS2 protein L were recently shown to reside on the N-terminal and C-terminal halves of the two respective lysis proteins. In the present study it is shown that the small lysis proteins encoded in various colicinogenic plasmids share local sequence similarities and certain structural characteristics with the essential peptides of their coliphage-coded counterparts. Despite their dissimilar sizes and origins, it is suggested that the colicinogenic lysis proteins are functionally analogous and evolutionarily related to those of icosahedral single- stranded DNA and RNA phages.      

Enzymic synthesis,chemical characterisation and Sda activity of GalNAcß1-4[NeuAcα2-3]Galß1-4GlcNAc and GalNAcß1-4[NeuAcα2-3]Galß1-4Glc

The tetrasaccharides GalNAcß1-4[NeuAc2-3]Galß1-4Glc and GalNAcß1-4[NeuAc2-3]Galß1-4GlcNAc were synthesised by enzymic transfer of GalNAc from UDP-GalNAc to 3-sialyllactose (NeuAc2-3Galß1-4Glc) and 3-sialyl-N-acetyllactosamine (NeuAc2-3Galß1-4GlcNAc). The structures of the products were established by methylation and¹H-500 MHz NMR spectroscopy. In Sd^a serological tests the product formed with 3-sialyl-N-acetyllactosamine was highly active whereas that formed with 3-sialyllactose had only weak activity.     

In vitro TRH release from hypothalamus slices varies during the diurnal cycle

We have previously described a daily rhythm in thyrotropin releasing hormone (TRH) and TRH mRNA in the rat hypothalamus. To determine whether TRH release fluctuates in a diurnal manner, we have measured basal and potassium stimulated release from hypothalamic slices, and compared it to release from olfactory bulb slices, during the diurnal cycle. Basal TRH release was higher at 7:00 h than at any other time (1:00, 13:00 or 19:00 h) in either hypothalamus or olfactory bulb. The ratio of stimulated over basal release was higher in the hypothalamus at 19:00 h, when TRH content was highest. Potassium stimulated TRH release from olfactory bulb was not different from basal release at any time. TRH release fluctuations were not due to a rhythm of extracellular inactivation: the activity of pyroglutamyl aminopeptidase II, an ectoenzyme responsible for TRH inactivation, was constant throughout the cycle. Our data demonstrate that diurnal variations of TRH release occur in vitro and that the enhanced responsiveness to potassium stimulation in hypothalamus is correlated with increased levels of peptide.     

Applications of DNA shuffling to pharmaceuticals and vaccines

DNA shuffling is a practical process for directed molecular evolution which uses recombination to dramatically accelerate the rate at which one can evolve genes. Single and multigene traits that require many mutations for improved phenotypes can be evolved rapidly. DNA shuffling technology has been significantly enhanced in the past year, extending its range of applications to small molecule pharmaceuticals, pharmaceutical proteins, gene therapy vehicles and transgenes, vaccines and evolved viruses for vaccines, and laboratory animal models.     

Early stages of vocal ontogeny in the magpie (Pica pica)

Summary The vocal repertoire of magpie (Pica pica) chicks consists of six calls: Begging Trill (BT), Soft Whistle (SW), Begging Scream (BS), Alarm Call (AC), Distress Call (DC) and Brief Contact Note (BCN). Both BT and SW have a tonal structure and their occurrence is restricted to the nestling period. At fledging, there is a gradual change from BT into BS and a sudden appearance of harsh calls similar to those of adult birds (AC, DC, BCN), without evident transitional forms with preceding tonal calls. Both the existence and the structural design of calls seem to be adapted for providing nestlings with immediate benefits linked to the two major chapters of allocation of parental care. Emission rates of BT increase with hunger motivation under laboratory conditions. Their structure suggests that they are easily located but liable to suffer from environmental degradation. BS of fledglings may be more resistant to degradation, a trait which may facilitate the identification by parents of their own offspring. Both AC and DC attract parents to defend the nest against potential predators, and their structure make them to be easily located and detectable at long distances. BCN are given by fledglings during bouts of locomotory activity (exploration and play) and they probably help in maintaining the cohesion of the group under conditions of poor visibility. In accordance, this call may be fairly located at short distances. The function of SW was unclear. It is given during periods of nestling inactivity between begging bouts, and could be easily elicited by tactile and auditory stimuli. After laboratory experiments, it is concluded that SW serve to indicate parents that nestlings are in good condition, hence to benefit from the parental willingness to invest in a brood with high prospects of survival. Since (i) there is a widespread lack of continuity in the development of adult vocalizations starting from nestling calls, and (ii) nestling calls seem to have evolved to provide birds with benefits in the short-term, these facts argue against the prevailing idea that the main function of calls early in ontogeny is to act as precursors of adult vocalizations.

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Zusammenfassung Das Lautrepertoire von Elsternestlingen besteht aus 6 Lautäußerungen: Betteltrillern (BT), Sanftes Pfeifen (SP), Bettelkreischen (BK), Alarmruf (AR), Angstschreien (AS) und kurzer Kontaktruf (KR). BT und SP sind tonal und treten nur während der Nestlingsperiode auf. Zum Zeitpunkt des Ausfliegens geht BT graduell in BK über und plötzlich treten auch ohne vorausgehende tonale Übergangsformen rauhe Rufe ähnlich denen der Altvögel auf (AR, AS, KR). Sowohl die Existenz als auch die Struktur der Lautäußerungen scheinen als Anpassungen im Zusammenhang mit einer Optimierung der Brutpflege zu interpretieren zu sein. Die Emissionsrate von BT steigt unter Laborbedingungen mit der Hungermotivation. Die Struktur legt nahe, daß BT leicht geortet werden kann, aber auch leicht von der Umgebung verschluckt wird. BS der flüggen Jungen scheint davon weniger betroffen zu sein, so daß die Eltern leichter ihre Jungen identifizieren können. AR und AS veranlassen die Altvögel, ihr Nest gegenüber potentiellen Prädatoren zu verteidigen; die Struktur der Laute begünstigt ihre Ortung und Wahrnehmung über größere Entfernungen. KR werden von den flüggen Jungen bei lebhafter lokomotorischer Aktivität (Exploration, Spiel) geäußert; sie tragen vielleicht dazu bei, die Gruppe auch unter erschwerten optischen Kontaktmöglichkeiten zusammenzuhalten. Die Funktion von SP blieb unklar. SP war während inaktiver Perioden zwischen Bettelverhalten zu hören und konnte leicht durch taktile und akustische Reize ausgelöst werden. Nach Laborexperimenten ist zu schließen, daß SP den Eltern Wohlbefinden der Jungen anzeigt und so Bereitschaft zur Investition in eine Brut mit hoher Überlebenswahrscheinlichkeit fördert. Daß (1) zwischen den Rufen der Altvögel und dem Repertoire der Nestlingen weitgehend keine kontinuierlichen Übergänge festzustellen und (2) Nestlingsrufe offensichtlich im Hinblick auf kuzfristige Gewinne zu interpretieren sind, spricht gegen die allgemein vorherrschende Ansicht, das Lautrepertoire in frühen Stadien der Ontogenie sei hauptsächlich ein Vorläufer der Adultlaute.

     

Flavodoxin overexpression confers tolerance to oxidative stress in beneficial soil bacteria and improves survival in the presence of the herbicides paraquat and atrazine

Aim

To determine whether expression of a cyanobacterial flavodoxin in soil bacteria of agronomic interest confers protection against the widely used herbicides paraquat and atrazine.

Methods and Results

The model bacterium Escherichia coli, the symbiotic nitrogen‐fixing bacterium Ensifer meliloti and the plant growth‐promoting rhizobacterium Pseudomonas fluorescens Aur6 were transformed with expression vectors containing the flavodoxin gene of Anabaena variabilis. Expression of the cyanobacterial protein was confirmed by Western blot. Bacterial tolerance to oxidative stress was tested in solid medium supplemented with hydrogen peroxide, paraquat or atrazine. In all three bacterial strains, flavodoxin expression enhanced tolerance to the oxidative stress provoked by hydrogen peroxide and by the reactive oxygen species‐inducing herbicides, witnessed by the enhanced survival of the transformed bacteria in the presence of these oxidizing agents.

Conclusions

Flavodoxin overexpression in beneficial soil bacteria confers tolerance to oxidative stress and improves their survival in the presence of the herbicides paraquat and atrazine. Flavodoxin could be considered as a general antioxidant resource to face oxidative challenges in different micro‐organisms.

Significance and Impact of the study

The use of plant growth‐promoting rhizobacteria or nitrogen‐fixing bacteria with enhanced tolerance to oxidative stress in contaminated soils is of significant agronomic interest. The enhanced tolerance of flavodoxin‐expressing bacteria to atrazine and paraquat points to potential applications in herbicide‐treated soils.     

Measurement of the Infection and Dissemination of Bluetongue Virus in Culicoides Biting Midges Using a Semi-Quantitative RT-PCR Assay and Isolation of Infectious Virus

Background

Culicoides biting midges (Diptera: Ceratopogonidae) are the biological vectors of globally significant arboviruses of livestock including bluetongue virus (BTV), African horse sickness virus (AHSV) and the recently emerging Schmallenberg virus (SBV). From 2006–2009 outbreaks of BTV in northern Europe inflicted major disruption and economic losses to farmers and several attempts were made to implicate Palaearctic Culicoides species as vectors. Results from these studies were difficult to interpret as they used semi-quantitative RT-PCR (sqPCR) assays as the major diagnostic tool, a technique that had not been validated for use in this role. In this study we validate the use of these assays by carrying out time-series detection of BTV RNA in two colony species of Culicoides and compare the results with the more traditional isolation of infectious BTV on cell culture.

Methodology/Principal Findings

A BTV serotype 1 strain mixed with horse blood was fed to several hundred individuals of Culicoides sonorensis (Wirth & Jones) and C. nubeculosus (Mg.) using a membrane-based assay and replete individuals were then incubated at 25°C. At daily intervals 25 Culicoides of each species were removed from incubation, homogenised and BTV quantified in each individual using sqPCR (C_q values) and virus isolation on a KC-C. sonorensis embryonic cell line, followed by antigen enzyme-linked immunosorbent assay (ELISA). In addition, comparisons were also drawn between the results obtained with whole C. sonorensis and with individually dissected individuals to determine the level of BTV dissemination.

Conclusions/Significance

C_q values generated from time-series infection experiments in both C. sonorensis and C. nubeculosus confirmed previous studies that relied upon the isolation and detection of infectious BTV. Implications on the testing of field-collected Culicoides as potential virus vectors by PCR assays and the use of such assays as front-line tools for use in diagnostic laboratories in this role are discussed.     

Community dynamics of nematodes after Larsen ice‐shelf collapse in the eastern Antarctic Peninsula

Free‐living marine nematode communities of the Larsen B embayment at the eastern Antarctic Peninsula were investigated to provide insights on their response and colonization rate after large‐scale ice‐shelf collapse. This study compares published data on the post‐collapse situation from 2007 with new material from 2011, focusing on two locations in the embayment that showed highly divergent communities in 2007 and that are characterized by a difference in timing of ice‐shelf breakup. Data from 2007 exposed a more diverse community at outer station B.South, dominated by the genus Microlaimus. On the contrary, station B.West in the inner part of Larsen B was poor in both numbers of individuals and genera, with dominance of a single Halomonhystera species. Re‐assessment of the situation in 2011 showed that communities at both stations diverged even more, due to a drastic increase in Halomonhystera at B.West compared to relatively little change at B.South. On a broader geographical scale, it seems that B.South gradually starts resembling other Antarctic shelf communities, although the absence of the genus Sabatieria and the high abundance of Microlaimus still set it apart nine years after the main Larsen B collapse. In contrast, thriving of Halomonhystera at B.West further separates its community from other Antarctic shelf areas.