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1.
Suppression of src transformation by overexpression of full-length GTPase-activating protein (GAP) or of the GAP C terminus. 总被引:29,自引:17,他引:12
Overexpression of the full-length GTPase-activating protein (GAP) has recently been shown to suppress c-ras transformation of NIH 3T3 cells but not v-ras transformation (36). Here, we show that focus formation induced by c-src was inhibited by approximately 80% when cotransfected with a plasmid encoding full-length GAP. In a similar assay, focus formation by the activated c-src (Tyr-527 to Phe) gene was inhibited by 33%. Cotransfection of the GAP C terminus coding sequences (which encode the GTPase-accelerating domain) with c-src or c-src527F inhibited transformation more efficiently than did the full-length GAP, while the GAP N terminus coding sequences had no effect on src transformation. When cells transformed by c-ras, c-src, c-src527F, or v-src were transfected with GAP or the GAP C terminus sequence in the presence of a selectable marker, 40 to 85% of the resistant colonies were found to be morphologically revertant. The GAP C terminus induced reversion of each src-transformed cell line more efficiently than the full-length GAP, but this was not the case for reversion of c-ras transformation. Biochemical analysis of v-src revertant subclones showed that the reversion correlated with overexpression of full-length GAP or the GAP C terminus. There was no decrease in the level of pp60src expression or the level of protein-tyrosine phosphorylation in vivo. We conclude that GAP can suppress transformation by src via inhibition of endogenous ras activity, without inhibiting in vivo tyrosine phosphorylation of cellular proteins induced by pp60src, and that src may negatively regulate GAP's inhibitory action on endogenous ras. 相似文献
2.
3.
Crystallographic characterization of a Cu,Zn superoxide dismutase from Photobacterium leiognathi 总被引:1,自引:0,他引:1
S M Redford D E McRee E D Getzoff H M Steinman J A Tainer 《Journal of molecular biology》1990,212(3):449-451
Crystals of a copper-zinc superoxide dismutase from Photobacterium leiognathi, a luminescent marine bacterium that is the species-specific symbiont of the ponyfish, have been obtained from 2-methyl-2,4-pentanediol solutions. The space group was determined using screenless small-angle precession photographs, and was confirmed by analyzing area detector diffraction data with the XENGEN programs for indexing and refinement. The crystals are monoclinic, space group C2 (a = 126.4 A, b = 87.0 A, c = 44.4 A, beta = 92.8 A), and have two 32,000 Mr dimers per asymmetric unit. The crystals diffract to at least 2.7 A resolution, are resistant to radiation damage, and are suitable for determination of the structure by X-ray diffraction. 相似文献
4.
Reavis Zackery W. Mirjankar Nikhil Sarangi Srikant Boyle Stephen H. Kuhn Cynthia M. Matson Wayne R. Babyak Michael A. Matson Samantha A. Siegler Ilene C. Kaddurah‑Daouk Rima Suarez Edward C. Williams Redford B. Grichnik Katherine Stafford‑Smith Mark Georgiades Anastasia 《Metabolomics : Official journal of the Metabolomic Society》2021,17(6):1-13
Metabolomics - Metabolomics applications to the aquaculture research are increasing steadily. The use of standardized proton nuclear magnetic resonance (1H NMR) spectroscopy can provide the... 相似文献
5.
Chloe I. Bloom Christine M. Graham Matthew P. R. Berry Fotini Rozakeas Paul S. Redford Yuanyuan Wang Zhaohui Xu Katalin A. Wilkinson Robert J. Wilkinson Yvonne Kendrick Gilles Devouassoux Tristan Ferry Makoto Miyara Diane Bouvry Valeyre Dominique Guy Gorochov Derek Blankenship Mitra Saadatian Phillip Vanhems Huw Beynon Rama Vancheeswaran Melissa Wickremasinghe Damien Chaussabel Jacques Banchereau Virginia Pascual Ling-pei Ho Marc Lipman Anne O’Garra 《PloS one》2013,8(8)
6.
Remko?de Knikker Youjun?Guo Jin-long?Li Albert?KH?Kwan Kevin?Y?Yip David?W?Cheung Kei-Hoi?CheungEmail author 《BMC bioinformatics》2004,5(1):25
Background
Very often genome-wide data analysis requires the interoperation of multiple databases and analytic tools. A large number of genome databases and bioinformatics applications are available through the web, but it is difficult to automate interoperation because: 1) the platforms on which the applications run are heterogeneous, 2) their web interface is not machine-friendly, 3) they use a non-standard format for data input and output, 4) they do not exploit standards to define application interface and message exchange, and 5) existing protocols for remote messaging are often not firewall-friendly. To overcome these issues, web services have emerged as a standard XML-based model for message exchange between heterogeneous applications. Web services engines have been developed to manage the configuration and execution of a web services workflow. 相似文献7.
8.
Introduction
The vast difference in the abundance of different proteins in biological samples limits the determination of the complete proteome of a cell type, requiring fractionation of proteins and peptides before MS analysis. 相似文献9.
Rodriguez-Agudo D Ren S Hylemon PB Redford K Natarajan R Del Castillo A Gil G Pandak WM 《Journal of lipid research》2005,46(8):1615-1623
Recently identified StarD5 belongs to the StarD4 subfamily, a subfamily of steroidogenic acute regulatory related lipid transfer (START) domain proteins that includes StarD4 and StarD6, proteins whose functions remain unknown. The objective of this study was to confirm StarD5's protein localization and sterol binding capabilities as measures to pursue function. Using rabbit polyclonal antibody against newly purified human histidine-tagged/StarD5 protein, StarD5 was detected in human liver. In parallel studies, increased expression of StarD5 in primary hepatocytes led to a marked increase in microsomal free cholesterol. Cell fractionation studies demonstrated StarD5 protein in liver cytosolic fractions only, suggesting StarD5 as a directional cytosolic sterol carrier. Supportive in vitro binding assays demonstrated a concentration-dependent binding of cholesterol by StarD5 similar to that of the cholesterol binding START domain protein StarD1. In contrast to selective cholesterol binding by StarD1, StarD5 bound the potent regulatory oxysterol, 25-hydroxycholesterol, in a concentration-dependent manner. StarD5 binding appeared selective for cholesterol and 25-hydroxycholesterol, as no binding was observed for other tested sterols. The ability of StarD5 to bind not only cholesterol but also 25-hydroxycholesterol, a potent inflammatory mediator and regulatory oxysterol, raises basic fundamental questions about StarD5's role in the maintenance of cellular cholesterol homeostasis. 相似文献
10.
The Importance of Defining 'Forest': Tropical Forest Degradation, Deforestation, Long-term Phase Shifts, and Further Transitions 总被引:3,自引:0,他引:3
While research continues on the causes, consequences, and rates of deforestation and forest degradation in the tropics, there is little agreement about what exactly is being lost, what we want back, and to whom the 'we' refers. Particularly unsettling is that many analyses and well-intended actions are implemented in fogs of ambiguity surrounding definitions of the term 'forest'—a problem that is not solely semantic; with development of markets for biomass carbon, vegetation classification exercises take on new relevance. For example, according to the basic implementation guidelines of the Kyoto Protocol, closed canopy natural forest could be replaced by monoclonal plantations of genetically engineered exotic tree species and no deforestation would have occurred. Following these same guidelines, carbon credits for afforestation could be available for planting trees in species-rich savannas; these new plantations would count towards a country moving towards the 'forest transition,' the point at which there is no net 'forest' loss. Such obvious conflicts between biodiversity conservation and carbon sequestration might be avoided if 'forest' was clearly defined and if other vegetation types and other ecosystem values were explicitly recognized. While acknowledging that no one approach to vegetation classification is likely to satisfy all users at all scales, we present an approach that recognizes the importance of species composition, reflects the utility of land-cover characteristics that are identifiable via remote sensing, and acknowledges that many sorts of forest degradation do not reduce carbon stocks ( e.g ., defaunation) or canopy cover ( e.g ., over-harvesting of understory nontimber forest products). 相似文献