Chromosomal localization and genomic organization of α-amylase genes in rice (Oryza sativa L.)

Summary Genes for -amylase, alcohol dehydrogenase, andEm, an ABA-regulated gene expressed late in embryogenesis, were localized on rice chromosomes by the analysis of primary trisomies. The validity of the mapping approach was confirmed usingAdh-1 as a control. TheAdh-1 gene has previously been assigned to chromosome 11 using conventional techniques. In this study we confirm this assignment and report an additional locus for alcohol dehydrogenase (Adh-2) on chromosome 9. The -amylase genes were located on chromosomes 1, 2, 6, 8, and 9 while theEm gene was mapped to chromosome 5. To facilitate trisomic analysis and correlation of cloned genes with bands observed on Southern blots, a nomenclature for the rice -amylase genes has been proposed. In addition to mapping nine cloned -amylase genes, we have identified two previously uncloned -amylase genes as part of this study. Polymorphism for -amylase genes belonging to each of the three subfamilies was observed between M202 and IR36. The maximum degree of polymorphism was found among genes belonging to the RAmy3 subfamily, which also has the most diverse group of genes.     

Chromosomal localization of four isozyme loci by trisomic analysis in rice (Oryza sativa L.)

Summary Four genes coding for isozymes in rice (Oryza sativa L.), were located to respective chromosmes through trisomic analysis. Twelve primary trisomics in IR36 background were crossed with 2 lines having contrasting alleles at four loci. For each gene, all 12 disomic and trisomic F₁ hybrids were screened for allele dosage effects. Either F₂ or BC1 populations of all cross combinations were assessed for gene segregtion. Evidence from both sources indicated the following locations: Pgi-1 on chromosome 4, Sdh-1 on chromosome 6, Est-8 on chromosome 7 and Adh-1 on chromosome 11. The location of Sdh-1 was further confirmed through the production of triallelic heterozygotes with trisomic 6.     

Localizing a-Amylase Gene Expression in Germinated Rice Grains

In situ hybridization was used to localize the sites of expressionfor two a-amylase genes (RAmy1A and RAmy3D) in rice (Oryza sativaL.) over five days of germination. Messenger RNAs from bothgenes were initially detected in the scutellar epithelium andappeared at later stages of germination in the aleurone layer.RAmy3D mRNA reached its peak of accumulation 2 days(d) earlierin the scutellar epithelium than RAmy1A mRNA. Both mRNAs continuedto accumulate in the aleurone layer up to 5 d of germination,although RAmy1A mRNA reached significantly higher levels thanRAmy3D mRNA. Overall, the aleurone layer was responsible forproducing the majority of the total grain a-amylase mRNA. (Received July 27, 1991; Accepted November 6, 1991)