Protaxodioxylon from the Late Jurassic to Early Cretaceous Kota Formation,Pranhita-Godavari Basin,India

Paleontological Journal - The xylotomy of the silicified wood from the Late Jurassic to Early Cretaceous Kota Formation of the Pranhita-Godavari Basin is studied and its systematic affinity is...     

Multiscale Model of Dynamic Neuromodulation Integrating Neuropeptide-Induced Signaling Pathway Activity with Membrane Electrophysiology

We developed a multiscale model to bridge neuropeptide receptor-activated signaling pathway activity with membrane electrophysiology. Typically, the neuromodulation of biochemical signaling and biophysics have been investigated separately in modeling studies. We studied the effects of Angiotensin II (AngII) on neuronal excitability changes mediated by signaling dynamics and downstream phosphorylation of ion channels. Experiments have shown that AngII binding to the AngII receptor type-1 elicits baseline-dependent regulation of cytosolic Ca²⁺ signaling. Our model simulations revealed a baseline Ca²⁺-dependent response to AngII receptor type-1 activation by AngII. Consistent with experimental observations, AngII evoked a rise in Ca²⁺ when starting at a low baseline Ca²⁺ level, and a decrease in Ca²⁺ when starting at a higher baseline. Our analysis predicted that the kinetics of Ca²⁺ transport into the endoplasmic reticulum play a critical role in shaping the Ca²⁺ response. The Ca²⁺ baseline also influenced the AngII-induced excitability changes such that lower Ca²⁺ levels were associated with a larger firing rate increase. We examined the relative contributions of signaling kinases protein kinase C and Ca²⁺/Calmodulin-dependent protein kinase II to AngII-mediated excitability changes by simulating activity blockade individually and in combination. We found that protein kinase C selectively controlled firing rate adaptation whereas Ca²⁺/Calmodulin-dependent protein kinase II induced a delayed effect on the firing rate increase. We tested whether signaling kinetics were necessary for the dynamic effects of AngII on excitability by simulating three scenarios of AngII-mediated K_DR channel phosphorylation: (1), an increased steady state; (2), a step-change increase; and (3), dynamic modulation. Our results revealed that the kinetics emerging from neuromodulatory activation of the signaling network were required to account for the dynamical changes in excitability. In summary, our integrated multiscale model provides, to our knowledge, a new approach for quantitative investigation of neuromodulatory effects on signaling and electrophysiology.     

Big domains are novel Ca²+-binding modules: evidences from big domains of Leptospira immunoglobulin-like (Lig) proteins

Background

Many bacterial surface exposed proteins mediate the host-pathogen interaction more effectively in the presence of Ca²⁺. Leptospiral immunoglobulin-like (Lig) proteins, LigA and LigB, are surface exposed proteins containing Bacterial immunoglobulin like (Big) domains. The function of proteins which contain Big fold is not known. Based on the possible similarities of immunoglobulin and βγ-crystallin folds, we here explore the important question whether Ca²⁺ binds to a Big domains, which would provide a novel functional role of the proteins containing Big fold.

Principal Findings

We selected six individual Big domains for this study (three from the conserved part of LigA and LigB, denoted as Lig A3, Lig A4, and LigBCon5; two from the variable region of LigA, i.e., 9^th (Lig A9) and 10^th repeats (Lig A10); and one from the variable region of LigB, i.e., LigBCen2. We have also studied the conserved region covering the three and six repeats (LigBCon1-3 and LigCon). All these proteins bind the calcium-mimic dye Stains-all. All the selected four domains bind Ca²⁺ with dissociation constants of 2–4 µM. Lig A9 and Lig A10 domains fold well with moderate thermal stability, have β-sheet conformation and form homodimers. Fluorescence spectra of Big domains show a specific doublet (at 317 and 330 nm), probably due to Trp interaction with a Phe residue. Equilibrium unfolding of selected Big domains is similar and follows a two-state model, suggesting the similarity in their fold.

Conclusions

We demonstrate that the Lig are Ca²⁺-binding proteins, with Big domains harbouring the binding motif. We conclude that despite differences in sequence, a Big motif binds Ca²⁺. This work thus sets up a strong possibility for classifying the proteins containing Big domains as a novel family of Ca²⁺-binding proteins. Since Big domain is a part of many proteins in bacterial kingdom, we suggest a possible function these proteins via Ca²⁺ binding.     

The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosoideae)

? Premise of the study: The evolutionary history of Leucaena has been impacted by polyploidy, hybridization, and divergent allopatric species diversification, suggesting that this is an ideal group to investigate the evolutionary tempo of polyploidy and the complexities of reticulation and divergence in plant diversification. ? Methods: Parsimony- and ML-based phylogenetic approaches were applied to 105 accessions sequenced for six sequence characterized amplified region-based nuclear encoded loci, nrDNA ITS, and four cpDNA regions. Hypotheses for the origin of tetraploid species were inferred using results derived from a novel species tree and established gene tree methods and from data on genome sizes and geographic distributions. ? Results: The combination of comprehensively sampled multilocus DNA sequence data sets and a novel methodology provide strong resolution and support for the origins of all five tetraploid species. A minimum of four allopolyploidization events are required to explain the origins of these species. The origin(s) of one tetraploid pair (L. involucrata/L. pallida) can be equally explained by two unique allopolyploidizations or a single event followed by divergent speciation. ? Conclusions: Alongside other recent findings, a comprehensive picture of the complex evolutionary dynamics of polyploidy in Leucaena is emerging that includes paleotetraploidization, diploidization of the last common ancestor to Leucaena, allopatric divergence among diploids, and recent allopolyploid origins for tetraploid species likely associated with human translocation of seed. These results provide insights into the role of divergence and reticulation in a well-characterized angiosperm lineage and into traits of diploid parents and derived tetraploids (particularly self-compatibility and year-round flowering) favoring the formation and establishment of novel tetraploids combinations.     

Volatile polysulphides of asafoetida

By means of steam distillation, adsorption chromatography and GC/MS analysis, seven sulphur components (di-, tri- and tetra-sulphides) have been characterised in addition to those previously reported from Ferula asafoetida of Afghan origin. The identity of some of the components has been confirmed by synthesis and comparison of GC retentions. The quantitative composition of the constituents in the volatile oil has also been determined.     

Mesozoic woods from India: Nomenclature review and palaeoclimatic implications

Nomenclature reappraisal, diversity pattern and palaeoclimatic implications of Jurassic, Triassic and Early Cretaceous pycnoxylic woods in India are undertaken in the present study. Among the fourteen generic names published previously, only eight are validly published and the rest are nomenclaturally illegitimate. About 51 species were reported under these genera to date. There is a gradual increase of species diversity of fossil wood from the Triassic to Early Cretaceous. The nature of the growth rings was applied to understand the palaeoclimate. The lack of distinct growth rings in the Triassic woods suggests absence of seasonality. The Jurassic woods with an inconsistency in growth rings and presence of growth interruptions suggest climate was seasonal and turbulent. During the Early Cretaceous, conifer dominated vegetation and with wider growth rings and gradual transition suggests warm environments with pronounced seasonality. The general increase in mean ring width from the Triassic to Early Cretaceous indicates ameliorating climatic conditions, particularly benign summer conditions.