Seasonal fluctuation of zooplankton populations in lower Delaware Bay

Quantitative zooplankton samples were obtained monthly or bi-monthly 15 times from June 1974 to May 1975 at three stations in lower Delaware Bay. Two 12-hour cruises were also conducted at one of the stations.Arthropods dominated the samples in terms of number of species and number of individuals. The number of zooplankton from surface samples ranged from 58/m³ in August to 21,092/ m³ in June, while bottom samples varied from 259/m³ in August to 30,395/ m³ in October. In general, larger concentrations of individuals were found in bottom samples.Only on three occasions did meroplankton exceed the holoplankton, and these occurred at the shallow water stations. Meroplankton comprised a larger percentage of the bottom samples than surface samples. Zoeae of Neopanope sayi and Uca sp. contributed mainly to the large proportion of meroplankton in July 1974, veligers of Mytilus edulis in January 1975, and nauplii of Balanus sp. in May 1975.Copepods were the largest component of the population throughout most of the year. At all stations and depths, Arctica tonsa dominated most of the summer samples. In the spring of 1975, A. tonsa was replaced by Centropages hamatus, Temora longicornis, and Pseudocalanus minutus.During the 12-hour cruises there were higher numbers of individuals in the bottom waters in the day with migration to surface waters in the afternoon and evening. Based on cluster analysis, five time-related assemblages were discerned: June, July–August, September–November, December, January–May. Comparison of Delaware Bay zooplankton with other estuarine systems indicated that the densities obtained locally were most similar to those reported in the York River, Virginia.     

Location and cloning of the ultraviolet-sensitizing function from the chromosomally associated IncJ group plasmid, R391

The IncJ plasmid R391, which specifies a uv-sensitizing function, has been shown to be associated with chromosomal DNA. Deletions originating from Tn10 insertion into the kanamycin-resistance determinant of plasmid R391 gave rise to uv-resistant derivatives. This apparent linkage between the kanamycin-resistance determinant and the uv-sensitizing gene(s) was used to clone the uv-sensitizing function from plasmid R391 into pUR222. A recombinant plasmid containing both functions (KanR and Uvs+) was obtained. The uv-sensitizing function was mapped to a 4-kb EcoRI fragment.     

cis-Platinum(II)diaminodichloride-induce mutagenesis in E. coli K12: crowding depression of mutagenesis

cis-Platinum(II)diamminodichloride (cis-PDD)-induced mutations to prototrophy were studied in Escherichia coli. Mutagenesis was not detected in a recA nor in a lexA mutant, but as greater in uvrA strain than in a repair-proficient strain, at a given treatment of cis-PDD. Increasing the plating density above 10⁵ cells per plate did not give an equivalent increase in revertants per plate [crowding depression of mutagenesis (Bockrath et al., 1980)]. Growth rates were similar at different plating densities and crowdign depression of mutagenesis was observed in both excision-proficient and excision-deficient strains.

A filtrate of a plate wash from crowded plates, of either treated or untreated cultuers, further reduced the mutation frequenciews over that due to crowding depression of mutagenesis.     

The effect of protease on stability of cellulase and xylanase fromCellulomonas flavigena

Summary Crude preparations of extracellular cellulase and xylanase fromCellulomonas flavigena at 4°C show a rapid loss of activity. With the protease inhibitors aprotinin and -2 macroglobulin this loss of activity could be dramatically reduced. Cellulase and xylanase extracted from a protease negative mutant were also more stable. When the cellulase and xylanase was purified by DEAE sepharose from wild type strains, the protease activity could be separated, such preparations of cellulase and xylanase were extremely stable.     

A novel ICE in the genome of Shewanella putrefaciens W3-18-1: comparison with the SXT/R391 ICE-like elements

A novel R391-like ICE (integrating conjugative element) has been detected in the 4.2 MB genome of Shewanella putrefaciens W3-18-1 located on three different contigs. Assembly of the ICE encoding contigs based on similarity with R391 revealed a mosaic element of plasmid, phage and transposon-like sequences typical of SXT/R391 ICE-like elements. The element, which is 110 057 bp in length, was highly similar to R391 sequences, with most related ORFs showing >96% amino acid sequence identity. The element, designated ICESpuPO1, contained a number of inserts determining resistance to copper and other heavy metals and a broad-spectrum RND efflux pump similar to antibiotic efflux systems. The element was integrated into the Shewanella prfC gene in a manner similar to related ICE-like elements. The chromosomal element junctions contained a 17-bp SXT/R391-like attL and attR site and an unannotated ORF between attL and the ICE integrase encoding a putative recombinational directional factor necessary for excision, with 100% amino acid identity to the R391 ORF4 product.     

Isolation of a novel<Emphasis Type="Italic"> Thermus thermophilus</Emphasis> metal efflux protein that improves<Emphasis Type="Italic"> Escherichia coli</Emphasis> growth under stress conditions

The mechanisms of metal ion transport in thermophilic organisms are poorly understood. Phage display-based screening of a Thermus thermophilus genomic library in Escherichia coli led to the identification of a novel metal cation efflux protein. The Thermus protein showed extensive sequence and putative structural conservation to Czr and Czc proteins in mesophilic bacterial and mammalian species. Expression of the gene in E. coli led to increased resistance to zinc and cadmium ions, but not to cobalt, in an effect that was apparently caused by increased efflux of metals from the cell. This increased resistance was inducible by zinc and cadmium and, to a lesser extent, by cobalt. Furthermore, E. coli cells containing the Thermus gene exhibited improved cell physiology and delayed cell lysis during recombinant protein production, leading to accumulation of higher levels of recombinant protein. The molecular basis and potential application of the findings are discussed.     

Effects of Fluctuating Temperatures and Different Host Plants on Development of Pasteuria penetrans in Meloidogyne javanica

Greenhouse and growth room experiments were conducted to investigate the effect of host plant in relation to different nematode inoculum levels, and temperature fluctuations on the development of Pasteuria penetrans. Host plant affected the development of P. penetrans indirectly through its effect on nematode development. Endospores collected from Meloidogyne javanica females reared on different hosts did not show any differences in subsequent attachment and infectivity. The numbers of endospores produced per infected female were reduced with increasing numbers of females parasitizing okra and tomato roots. Fluctuating temperatures retarded the development of P. penetrans. The life cycle of the parasite was completed faster at approximately constant temperatures close to 30 °C than when the temperature fluctuated away from 30 °C. The temperature of irrigation water did not affect the duration of life cycle of P. penetrans.     

Pulsed field gel electrophoresis to rapidly detect the presence of IncJ conjugative transposon-like elements

AIMS: To develop a screening method to detect the presence of the IncJ group of integrating conjugative transposon-like elements upon transfer to Escherichia coli. METHODS AND RESULTS: The unique insertion site of known IncJ elements, the prfC gene, is located in a region of the E. coli chromosome between 98.5 and 100 min on the E. coli genetic map. Using pulsed field gel electrophoresis and the rare cutting restriction enzymes SfiI and XbaI insertions of IncJ elements and an estimate of their size could be determined physically. CONCLUSIONS: This method allows initial screening of putative IncJ conjugative transposon-like elements by physical determination of their integration. Significance and Impact of the Study: IncJ-like elements, which appear to be highly homologous to the prototype IncJ element R391, have been found associated with recent epidemic outbreaks of cholera in a number of locations worldwide. Because of their integrative biology this method provides the first initial screening method to physically determine their presence upon transfer to E. coli.