A correlation between BCL-2 modifying factor,p53 and livin gene expressions in cancer colon patients

Accumulating evidence has revealed that livin gene and BCL-2 modifying factor (BMF) gene are closely associated with the initiation and progression of colon carcinoma by activating or suppressing multiple malignant processes. Those genes that can detect colon - cancer are a promising approach for cancer screening and diagnosis. This study aimed to evaluate correlation between livin, BMF and p53 genes expression in colon cancer tissues of patients included in the study, and their relationship with clinicopathological features and survival outcome in those patients. In this study, 50 pathologically diagnosed early cancer colon patients included and their tissue biopsy with 50 matched adjacent normal tissue, and 50 adenoma tissue specimens were analyzed for livin gene and BMF gene expressions using real time PCR. The relationship of those genes expressions with clinicopathological features, tumor markers, Time to Progression and overall survival for those patients were correlated in cancer colon group. In this study, there was a significant a reciprocal relationship between over expression of livin gene and down regulation of BMF and p53 genes in colon cancer cells. Livin mRNA was significantly higher, while BMF and p53 mRNA were significantly lower in colorectal cancer tissue compared to benign and normal colon tissue specimens (P < 0.001), however, this finding was absent between colon adenomas and normal mucosa. There was a significant association between up regulation of livin and down regulation of BMF and p53 expressions with more aggressive tumor (advanced TNM stage), rapid progression with metastasis and decreased overall survival in cancer colon patients, hence these genes can serve as significant prognostic markers of poor outcome in colon cancer patients. This work highlights the role of livin, BMF and p53 genes in colorectal tumorigenesis and the applicability of using those genes as a diagnostic and prognostic markers in patients with colon carcinoma and as a good target for cancer colon treatment in the future.     

Biocides formulation of essential oils having antimicrobial activity

Essential oils of fennel, peppermint, caraway, eucalyptus, geranium and lemon were tested for their antimicrobial activities against some plant pathogenic micro-organisms (Fusarium oxysporum, Alternaria alternate, Penicilium italicum Penicilium digitatum and Botyritus cinerea). Essential oils of fennel, peppermint, caraway were selected as an active ingredient for the formulation of biocides due to their efficiency in controlling the tested micro-organisms. Successful emulsifiable concentrates (biocides) were prepared from these oils using different emulsifiers (Emulgator B.L.M. Tween20 and Tween80) and different fixed oils (sesame, olive, cotton and soybean oils). Physico-chemical properties of the formulated biocide (spontaneous emulsification, emulsion stability test, cold stability and heat stability tests as well as viscosity, surface tension and pH) were measured. The prepared biocides were ready to be tested for application in a future work as a safe pesticide against different pathogens.     

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

Organic Lake is a shallow, marine-derived hypersaline lake in the Vestfold Hills, Antarctica that has the highest reported concentration of dimethylsulfide (DMS) in a natural body of water. To determine the composition and functional potential of the microbial community and learn about the unusual sulfur chemistry in Organic Lake, shotgun metagenomics was performed on size-fractionated samples collected along a depth profile. Eucaryal phytoflagellates were the main photosynthetic organisms. Bacteria were dominated by the globally distributed heterotrophic taxa Marinobacter, Roseovarius and Psychroflexus. The dominance of heterotrophic degradation, coupled with low fixation potential, indicates possible net carbon loss. However, abundant marker genes for aerobic anoxygenic phototrophy, sulfur oxidation, rhodopsins and CO oxidation were also linked to the dominant heterotrophic bacteria, and indicate the use of photo- and lithoheterotrophy as mechanisms for conserving organic carbon. Similarly, a high genetic potential for the recycling of nitrogen compounds likely functions to retain fixed nitrogen in the lake. Dimethylsulfoniopropionate (DMSP) lyase genes were abundant, indicating that DMSP is a significant carbon and energy source. Unlike marine environments, DMSP demethylases were less abundant, indicating that DMSP cleavage is the likely source of high DMS concentration. DMSP cleavage, carbon mixotrophy (photoheterotrophy and lithoheterotrophy) and nitrogen remineralization by dominant Organic Lake bacteria are potentially important adaptations to nutrient constraints. In particular, carbon mixotrophy relieves the extent of carbon oxidation for energy production, allowing more carbon to be used for biosynthetic processes. The study sheds light on how the microbial community has adapted to this unique Antarctic lake environment.     

Germination of <i>Eryngium regnellii</i>: a major species for ecological restoration of plant-pollinator interactions in the Southern Pampas (Buenos Aires,Argentina)

Eryngium regnellii Malme belongs to the largest genera in the Apiaceae family, with 250 species worldwide and 65 represented in South America. It is a herbaceous species typical of hill plant communities, which, along with remnant grassland patches, are the most relevant natural habitats for the maintenance of diversity in the Southern Pampas. Eryngium regnellii is key to the maintenance of pollination mutualisms, being a generalist (displaying a diverse assemblage of pollinators) and ubiquitous species (present in all studied sierras). However, fragmentation of the Pampean landscape due to agricultural intensification has led to the loss of natural environments. Therefore, the reintroduction of E. regnellii in strategic places would facilitate the occurrence of wild pollinators, while favoring pollination services in the agroecosystem. The germination requirements of E. regnellii were studied because a better knowledge of the reproductive biology of this species would provide information relevant to its reproduction and reintroduction into degraded areas. Germination percentages and mean time to germination were evaluated, using one control and two pre-germination treatments: chemical scarification with sulfuric acid, and mechanical scarification with sand paper. Chemical scarified seeds did not germinate. Mechanically scarified and control seed groups showed no significant differences either in germination percentages (49% and 59% respectively) or in mean germination time (13 and 14 days, respectively). Results indicate that E. regnellii shows no physical dormancy, and does not require specific pre-germination treatments for germination under the studied laboratory conditions. The high germination capacity of E. regnellii, along with its ecological attributes, make it a potential species for restoring plant-pollinator interactions in the fragmented landscapes of the Southern Pampas.     

Nitrate reductase activity,biomass, yield,and quality in cotton in response to nitrogen fertilization

In the production of cotton (Gossypium hirsutum L.), nitrogen fertilization is one of the most costly crop practices, but important to reach high yields. However, high nitrogen (N) content in plants does not always translate into a high fibre production. One way of assessing the efficiency of the N fertilizer is through the enzymatic activity of the nitrate reductase (NR). This is a key enzyme in N assimilation, whose activity is regulated by a number of endogenous and exogenous factors that determine yield. The aim of this study was to assess the effect of N fertilization on yield, fibre quality, biomass, and NR enzymatic activity in vivo in the cotton variety Fiber Max 989. The evaluated application rates were 0, 50, 100, and 150 kg/ha of N, using urea as a source (46% N) in a randomizedblock design with three replicates. At harvest, the maximum yield of seed cotton and the greatest accumulation of total foliar biomass through time was reached after applying 150 kg N/ha. The different N-application rates did not affect the components of cotton-fibre quality. The activity of endogenous NR was greater on plants where 150 kg N/ha were applied. The highest cotton yield and N contents were obtained on these plants. Therefore, the NR activity in vivo could be used as a bioindicator of the N nutritional level in cotton.     

Life cycle assessment of soybean-based biodiesel in Argentina for export

Background, aim and scope

Regional specificities are a key factor when analyzing the environmental impact of a biofuel pathway through a life cycle assessment (LCA). Due to different energy mixes, transport distances, agricultural practices and land use changes, results can significantly vary from one country to another. The Republic of Argentina is the first exporter of soybean oil and meal and the third largest soybean producer in the world, and therefore, soybean-based biodiesel production is expected to significantly increase in the near future, mostly for exportation. Moreover, Argentinean biodiesel producers will need to evaluate the environmental performances of their product in order to comply with sustainability criteria being developed. However, because of regional specificities, the environmental performances of this biofuel pathway can be expected to be different from those obtained for other countries and feedstocks previously studied. This work aims at analyzing the environmental impact of soybean-based biodiesel production in Argentina for export. The relevant impact categories account for the primary non-renewable energy consumption (CED), the global warming potential (GWP), the eutrophication potential (EP), the acidification potential (AP), the terrestrial ecotoxicity (TE), the aquatic ecotoxicity (AE), the human toxicity (HT) and land use competition (LU). The paper tackles the feedstock and country specificities in biodiesel production by comparing the results of soybean-based biodiesel in Argentina with other reference cases. Emphasis is put on explaining the factors that contribute most to the final results and the regional specificities that lead to different results for each biodiesel pathway.

Materials and methods

The Argentinean (AR) biodiesel pathway was modelled through an LCA and was compared with reference cases available in the ecoinvent® 2.01 database, namely, soybean-based biodiesel production in Brazil (BR) and the United States (US), rapeseed-based biodiesel production in the European Union (EU) and Switzerland (CH) and palm-oil-based biodiesel production in Malaysia (MY). In all cases, the systems were modelled from feedstock production to biodiesel use as B100 in a 28 t truck in CH. Furthermore, biodiesel pathways were compared with fossil low-sulphur diesel produced and used in CH. The LCA was performed according to the ISO standards. The life cycle inventory and the life cycle impact assessment (LCIA) were performed in Excel spreadsheets using the ecoinvent® 2.01 database. The cumulative energy demand (CED) and the GWP were estimated through the CED for fossil and nuclear energy and the IPCC 2001 (climate change) LCIA methods, respectively. Other impact categories were assessed according to CML 2001, as implemented in ecoinvent. As the product is a fuel for transportation (service), the system was defined for one vehicle kilometre (functional unit) and was divided into seven unit processes, namely, agricultural phase, soybean oil extraction and refining, transesterification, transport to port, transport to the destination country border, distribution and utilisation.

Results

The Argentinean pathway results in the highest GWP, CED, AE and HT compared with the reference biofuel pathways. Compared with the fossil reference, all impact categories are higher for the AR case, except for the CED. The most significant factor that contributes to the environmental impact in the Argentinean case varies depending on the evaluated category. Land provision through deforestation for soybean cultivation is the most impacting factor of the AR biodiesel pathway for the GWP, the CED and the HT categories. Whilst nitrogen oxide emissions during the fuel use are the main cause of acidification, nitrate leaching during soybean cultivation is the main factor of eutrophication. LU is almost totally affected by arable land occupation for soybean cultivation. Cypermethrin used as pesticide in feedstock production accounts for almost the total impact on TE and AE.

Discussion

The sensitivity analysis shows that an increase of 10% in the soybean yield, whilst keeping the same inputs, will reduce the total impact of the system. Avoiding deforestation is the main challenge to improve the environmental performances of soybean-based biodiesel production in AR. If the soybean expansion can be done on marginal and set-aside agricultural land, the negative impact of the system will be significantly reduced. Further implementation of crops’ successions, soybean inoculation, reduced tillage and less toxic pesticides will also improve the environmental performances. Using ethanol as alcohol in the transesterification process could significantly improve the energy balance of the Argentinean pathway.

Conclusions

The main explaining factors depend on regional specificities of the system that lead to different results from those obtained in the reference cases. Significantly different results can be obtained depending on the level of detail of the input data, the use of punctual or average data and the assumptions made to build up the LCA inventory. Further improvement of the AR biodiesel pathways should be done in order to comply with international sustainability criteria on biofuel production.

Recommendations and perspectives

Due to the influence of land use changes in the final results, more efforts should be made to account for land use changes others than deforestation. More data are needed to determine the part of deforestation attributable to soybean cultivation. More efforts should be done to improve modelling of interaction between variables and previous crops in the agricultural phase, future transesterification technologies and market prices evolution. In order to assess more accurately the environmental impact of soybean-based biodiesel production in Argentina, further considerations should be made to account for indirect land use changes, domestic biodiesel consumption and exportation to other regions, production scale and regional georeferenced differentiation of production systems.     

Structure, function, and motility of vacuoles in filamentous fungi

Current information on the structure and function of motile tubular vacuoles in Pisolithus tinctorius and other fungi is reviewed. The use of fluorochromes to label the vacuole lumen is evaluated and observations on the structure and motility of vacuoles in P. tinctorius are differentiated from possible artifacts. The styryl dyes FM4-64 and MDY-64, used in yeast to demonstrate endocytosis, show little or no labeling of internal membranes in undamaged P. tinctorius cells. This agrees with our data showing that other probes for endocytosis such as Lucifer yellow CH are not taken up by hyphal tip cells. Overall, the observations do not support endocytosis in hyphal tips. It has been suggested that tubular vacuole systems carry out longitudinal transport, and evidence in favor of this hypothesis is evaluated. New data are presented to show that many of the large vacuoles in subapical cells are attached to the plasma membrane and are relatively immobile, while video sequences show movement of fluorochrome in pulses along a series of several large vacuoles, all interconnected via tubules. Tubular vacuoles from thick sections of hyphae processed under anhydrous conditions are shown by X-ray microanalysis to contain relatively high levels of P and K, as seen previously in the larger vacuoles. These results provide further evidence for a role of the tubular vacuoles in longitudinal transport of P. Copyright 1998 Academic Press.