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1.
Maintenance of the cellobiose utilization genes of Escherichia coli in a cryptic state 总被引:6,自引:1,他引:5
The genes for cellobiose utilization are normally cryptic in Escherichia
coli. The cellobiose system was used as a model to understand the process
by which silent genes are maintained in microbial populations. Previously
reported was (1) the isolation of a mutant strain that expresses the
cellobiose-utilization (Cel) genes and (2) that expression of those genes
allows utilization of three beta- glucoside sugars: cellobiose, arbutin,
and salicin. The Cel gene cluster has now been cloned from that mutant
strain. In the course of locating the Cel genes within the cloned DNA
segment, it was discovered that inactivation of the Cel-encoded hydrolase
rendered the host strain sensitive to all three beta-glucosides as potent
inhibitors. This sensitivity arises from the accumulation of the
phosphorylated beta- glucosides. Because even the fully active genes
conferred some degree of beta-glucoside sensitivity, the effects of
cellobiose on a series of five Cel+ mutants of independent origin were
investigated. Although each of those strains utilizes cellobiose as a sole
carbon and energy source, cellobiose also acts as a potent inhibitor that
reduces the growth rate on glycerol 2.5-16.5-fold. On the other hand,
wild-type strains that cannot utilize cellobiose are not inhibited. The
observation that the same compound can serve either as a nutrient or as an
inhibitor suggests that, under most conditions in which cellobiose will be
present together with other resources, there is a strong selective
advantage to having the cryptic (Cel0) allele. In those environments in
which cellobiose is the sole, or the best, resource, mutants that express
the genes (Cel+) will have a strong selective advantage. It is suggested
that temporal alternation between these two conditions is a major factor in
the maintenance of these genes in E. coli populations. This alternation of
environments and fitnesses was predicted by the model for cryptic-gene
maintenance that was previously published.
相似文献
2.
Sciulli PW 《American journal of physical anthropology》2001,116(2):140-153
Deciduous tooth size in Native Americans of the Ohio Valley area is fairly stable from the terminal Late Archaic (3200 BP) through the Late Prehistoric (350 BP) periods. Some fluctuation in average size did occur during this time. These fluctuations most likely reflect random changes due to gene drift. However, no difference in the pattern of interactions among the sizes of teeth (covariance structures) can be demonstrated during this period. Principal components analysis of the buccolingual and mesiodistal dimensions in the total sample indicate that the major axis of deciduous tooth size in the Ohio Valley population shows an allometric relationship, with the dimensions of the anterior teeth increasing (or decreasing) as the 1.33 power of the dimension of m1(1) and as the 2.0 power of the dimension of m2(2). Comparison of the Ohio Valley samples with other samples from the Eastern Woodlands suggests that geography may have played a minor role in structuring deciduous tooth size variation. For the most part, however, widely separated Eastern Woodlands populations appear to have been evolving independently with respect to deciduous tooth size. 相似文献
3.
Britney Kyle McIlvaine Lynne A. Schepartz Clark Spencer Larsen Paul W. Sciulli 《American journal of physical anthropology》2014,153(2):236-248
This article seeks to identify “Greeks” and “non‐Greeks” in “mixed” mortuary contexts in a Greek colony. Specifically, we test the hypothesis that Illyrian and Greek individuals lived and were buried together at the Corinthian colony of Apollonia, Albania (established ca. 600 BC). The pattern of human biological interaction at Apollonia is tested by identifying variation in genetic relatedness using biodistance analysis of dental and cranial nonmetric traits for three sites: Apollonia (n = 116), its founder‐city Corinth (n = 69), and Lofkënd (n = 108), an inland site near Apollonia pre‐dating colonization. Logistic regression analysis estimates that individuals from colonial Apollonia are most closely related to prehistoric Illyrian populations (from Lofkënd and prehistoric Apollonia), rather than Greeks (from Corinth). The phenotypic similarity between colonial Apollonia and prehistoric Illyria suggests that there was a large Illyrian contribution to the gene pool at the colony of Apollonia. However, some trait combinations show low biological distances among all groups, suggesting homogeneity among Illyrian and Greek populations (assessed through pseudo‐Mahalanobis' D2). The degree of phenotypic similarity suggests shared ancestry and long‐term migration throughout these regions. The impacts of missing data and small sample sizes are also considered. Am J Phys Anthropol 153:236–248, 2014. © 2013 Wiley Periodicals, Inc. 相似文献
4.
Gwen Robbins Paul W. Sciulli Samantha H. Blatt 《American journal of physical anthropology》2010,143(1):146-150
Methods for estimating body mass from the human skeleton are often required for research in biological or forensic anthropology. There are currently only two methods for estimating body mass in subadults: the width of the distal femur metaphysis is useful for individuals 1–12 years of age and the femoral head is useful for older subadults. This article provides age‐structured formulas for estimating subadult body mass using midshaft femur cross‐sectional geometry (polar second moments of area). The formulas were developed using data from the Denver Growth Study and their accuracy was examined using an independent sample from Franklin County, Ohio. Body mass estimates from the midshaft were compared with estimates from the width of the distal metaphysis of the femur. Results indicate that accuracy and bias of estimates from the midshaft and the distal end of the femur are similar for this contemporary cadaver sample. While clinical research has demonstrated that body mass is one principle factor shaping cross‐sectional geometry of the subadult midshaft femur, clearly other biomechanical forces, such as activity level, also play a role. Thus formulas for estimating body mass from femoral measurements should be tested on subadult populations from diverse ecological and cultural circumstances to better understand the relationship between body mass, activity, diet, and morphology during ontogeny. Am J Phys Anthropol 143:146–150, 2010. © 2010 Wiley‐Liss, Inc. 相似文献
5.
6.
Elisabeth APM Romme Piet Geusens Willem F Lems Erica PA Rutten Frank WJM Smeenk Joop PW van den Bergh Peter ThW van Hal Emiel FM Wouters 《Respiratory research》2015,16(1)
Although osteoporosis and its related fractures are common in patients with COPD, patients at high risk of fracture are poorly identified, and consequently, undertreated. Since there are no fracture prevention guidelines available that focus on COPD patients, we developed a clinical approach to improve the identification and treatment of COPD patients at high risk of fracture. We organised a round-table discussion with 8 clinical experts in the field of COPD and fracture prevention in the Netherlands in December 2013. The clinical experts presented a review of the literature on COPD, osteoporosis and fracture prevention. Based on the Dutch fracture prevention guideline, they developed a 5-step clinical approach for fracture prevention in COPD. Thereby, they took into account both classical risk factors for fracture (low body mass index, older age, personal and family history of fracture, immobility, smoking, alcohol intake, use of glucocorticoids and increased fall risk) and COPD-specific risk factors for fracture (severe airflow obstruction, pulmonary exacerbations and oxygen therapy). Severe COPD (defined as postbronchodilator FEV1 < 50% predicted) was added as COPD-specific risk factor to the list of classical risk factors for fracture. The 5-step clinical approach starts with case finding using clinical risk factors, followed by risk evaluation (dual energy X-ray absorptiometry and imaging of the spine), differential diagnosis, treatment and follow-up. This systematic clinical approach, which is evidence-based and easy-to-use in daily practice by pulmonologists, should contribute to optimise fracture prevention in COPD patients at high risk of fracture. 相似文献
7.
This investigation evaluates the performance of juvenile stature (from tibia and radius lengths) and body mass (from breadth of the femoral distal metaphysis) prediction equations based on the Denver Growth Study sample (Ruff C. 2007. Am J Phys Anthropol 133 698-716). The sample used here for evaluation is an independent sample of juveniles brought to the Franklin County (Ohio) Coroner in 1990-1991. The Ohio sample differs somewhat from the Denver reference sample: it includes approximately 25% African-Americans (rather than all European-Americans), a significant number of right limb bones were measured (rather than all left side), it includes a wider range of economic statuses and it includes individuals who died from disease and trauma. As such the composition and measures of the Ohio sample correspond more generally to that seen in skeletal samples so that the accuracy of the estimates from the present sample should approach those found in practical applications of these methods. Results indicate that both juvenile body mass and stature are estimated relatively accurately. Accuracy of body mass estimates for 1-13-year-old juveniles is similar for African-American and European-American males and females. The least accurate estimates are for individuals in the 8-13 years age class (excluding individuals with body mass indices greater than the age specific 95th percentile): n = 9, +/- 2.9 kg, 95% confidence interval 1.4-4.4 kg. Accuracy of stature estimates for 1-17-year-old juveniles is comparable for the tibia and radius and, as with body mass estimates, are similar for African-American and European-American males and females. For combined age, sex, and ancestry groups average accuracies are in the +/-3.5 to +/-6.5 cm range. Some limitations of the methods are discussed. 相似文献
8.
Fredrick M Mobegi Sacha AFT van Hijum Peter Burghout Hester J Bootsma Stefan PW de Vries Christa E van der Gaast-de Jongh Elles Simonetti Jeroen D Langereis Peter WM Hermans Marien I de Jonge Aldert Zomer 《BMC genomics》2014,15(1)
Background
Bacterial respiratory tract infections, mainly caused by Streptococcus pneumoniae, Haemophilus influenzae and Moraxella catarrhalis are among the leading causes of global mortality and morbidity. Increased resistance of these pathogens to existing antibiotics necessitates the search for novel targets to develop potent antimicrobials.Result
Here, we report a proof of concept study for the reliable identification of potential drug targets in these human respiratory pathogens by combining high-density transposon mutagenesis, high-throughput sequencing, and integrative genomics. Approximately 20% of all genes in these three species were essential for growth and viability, including 128 essential and conserved genes, part of 47 metabolic pathways. By comparing these essential genes to the human genome, and a database of genes from commensal human gut microbiota, we identified and excluded potential drug targets in respiratory tract pathogens that will have off-target effects in the host, or disrupt the natural host microbiota. We propose 249 potential drug targets, 67 of which are targets for 75 FDA-approved antimicrobials and 35 other researched small molecule inhibitors. Two out of four selected novel targets were experimentally validated, proofing the concept.Conclusion
Here we have pioneered an attempt in systematically combining the power of high-density transposon mutagenesis, high-throughput sequencing, and integrative genomics to discover potential drug targets at genome-scale. By circumventing the time-consuming and expensive laboratory screens traditionally used to select potential drug targets, our approach provides an attractive alternative that could accelerate the much needed discovery of novel antimicrobials.Electronic supplementary material
The online version of this article (doi:10.1186/1471-2164-15-958) contains supplementary material, which is available to authorized users. 相似文献9.
P Patrignani M G Sciulli S Manarini G Santini C Cerletti V Evangelista 《Journal of physiology and pharmacology》1999,50(4):661-667
The occurrence of aspirin resistance has been inferred by the assessment of platelet aggregation ex vivo in patients with ischemic vascular syndromes taking aspirin. Since aspirin is a weak inhibitor of the inducible isoform of prostaglandin H synthase (COX-2), it was suggested that COX-2 may play a role in aspirin resistance. However the cellular source(s) of COX-2 possibly responsible for aspirin resistance remains unknown. Recently, the expression of the inducible isoform of COX-2 in circulating human platelets was reported. To investigate the possible contribution of COX-2 expression in platelet thromboxane (TX) biosynthesis, we have compared the inhibitory effects of NS-398 and aspirin, selective inhibitors of COX-2 and COX-1, respectively, on prostanoid biosynthesis by thrombin-stimulated platelets vs lipopolysaccharide (LPS)stimulated monocytes (expressing high levels of COX-2) isolated from whole blood of healthy subjects. NS-398 was 180-fold more potent in inhibiting monocyte COX-2 activity than platelet TXB2 production. In contrast, aspirin (55 micromol/L) largely suppressed platelet TXB2 production without affecting monocyte COX-2 activity. By using specific Western blot techniques, we failed to detect COX-2 in platelets while COX-1 was readily detectable. Our results argue against the involvement of COX-2 in TX biosynthesis by activated platelets and consequently dispute platelet COX-2 expression as an important mechanism of aspirin resistance. 相似文献
10.
Many anthropologic investigations involve measurement and analysis of polygenic skeletal and dental traits in prehistoric populations from which genetic details cannot be inferred. However, population genetics concepts can be applied productively to analyses of phenotypic variation in prehistoric human populations. One potentially useful approach, derived from basic quantitative genetics (Lande 1976, p. 314), models the effects of natural selection and random genetic drift on the evolution of the average phenotype in a population. We apply this model to the problem of dental size reduction in three prehistoric Amerindian populations from Ohio. Conversion of mean log-transformed buccolingual diameters for six permanent teeth (maxillary and mandibular I1, M1, and M2) to phenotypic standard deviation units reveals significant size reduction in the maxillary teeth only. By assuming 40 generations (t) between the 2 populations and a narrow heritability (h2) range of 0.30-0.70, the estimated minimum selective mortality required to produce the reductions is 1.8 deaths per 100 persons per generation. Given the same t and h2 values, the effective population size (Ne) needed to reject the neutral hypothesis (i.e., random genetic drift) with 95% confidence is approximately 150. Because paleodemographic and ethnographic studies suggest minimum effective sizes of this magnitude for these populations, we tentatively reject random genetic drift and conclude that selective mortality is most probably responsible for the maxillary tooth size reduction observed. 相似文献