Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization

Photosynthetic pico- and nanoplankton dominate phytoplankton biomass and primary production in the oligotrophic open ocean. Species composition, community structure, and dynamics of the eukaryotic components of these size classes are poorly known primarily because of the difficulties associated with their preservation and identification. Molecular techniques utilizing 18S rRNA sequences offer a number of new and rapid means of identifying the picoplankton. From the available 18S rRNA sequence data for the algae, we designed new group-specific oligonucleotide probes for the division Chlorophyta, the division Haptophyta, and the class Pelagophyceae (division Heterokonta). Dot blot hybridization with polymerase chain reaction amplified target rDNA and whole-cell hybridization assays with fluorescence microscopy and flow cytometry were used to demonstrate probe specificity. Hybridization results with representatives from seven algal classes supported the phylogenetic affinities of the cells. Such group- or taxon-specific probes will be useful in examining community structure, for identifying new algal isolates, and for in situ detection of these three groups, which are thought to be the dominant algal taxa in the oligotrophic regions of the ocean.     

Phytoplankton community growth-rate response to nutrient pulses in a shallow turbid estuary, Galveston Bay, Texas

Phytoplankton growth is a physiological process often limitedby temperature, nutrients or light, while biomass accumulationis a function of growth rates, grazing and deposition. Althoughprimary productivity measurements are usually used to assessresponses to limiting factors, the rates are proportional tobiomass and inversely related to grazing pressure during experimentalincubations. Alternatively, carbon-specific growth-rate determinationsprovide insights into physiological responses without the confoundingeffects of biomass and grazing. The objective of this studywas to quantify the growth-rate responses of phytoplankton toenhanced nutrient availability (nitrate and phosphate) overa range of in situ irradiances. Growth rates were determinedbased on chlorophyll a-specific ¹⁴C-uptake rates by phytoplankton.Phytoplankton demonstrated high (24 h) growth rates when exposedto increased concentrations of limiting nutrients, independentof the surface irradiances (12–41%). Growth-rate responseswere also compared with the biomass (chlorophyll a) responsesand community composition. Observed and estimated phytoplanktonbiomass changes during the incubations differed, emphasizingthe structural role of grazers on the phytoplankton community.The phytoplankton community in Galveston Bay has the potentialto instantaneously respond to nutrient pulses, facilitatingdiatom biomass accumulations in spring and summer and small,flagellated species and cyanobacteria during periods of lownutrient inputs. Thus, Galveston Bay phytoplankton biomass andcommunity composition reflect a dynamic balance between thefrequency of nutrient pulsing and grazing intensity.