Identification of proteins with altered expression in colorectal cancer by means of 2D-proteomics

Modern proteomic techniques make it possible to identify numerous changes in protein expression in tumors as compared to normal tissues. Although proteomics is currently widely used, identification of proteins differentially expressed in particular types of cancer remains a challenging task. The goal of our study was to detect novel protein markers of colorectal cancer using comparative proteomics of protein extracts obtained from primary tumors and adjacent normal tissues. Coloreetal cancer is nearly asymptomatic at the early stages, which calls for development of fast and sensitive methods for molecular diagnostics. Proteomes of 11 paired specimens of primary colorectal tumors and adjacent histologically normal tissues were studied using comparative 2D PAGE. Altogether, 16 proteins with altered expression levels were detected, including 13 proteins with increased levels and three proteins with decreased levels in tumor tissues. These proteins were identified using MALDI-TOF mass spectrometry. The proteins GPD1, RRBP1 (increased levels), HNRNPH1, and SERPINB6 (decreased levels) have been associated with colorectal cancer for the first time.     

Dynamics of the mammal fauna in steppes of the Volga-Ural interfluve over the past century

The steppe theriofauna of the Volga-Ural interfluve has been changing during the past century under the effect of both natural and anthropogenic factors. These changes have manifested themselves most clearly in the desert Caspian steppes and the dry steppes of the Transvolga Syrt Plain. A total of 66 mammal species are listed for this region. Some of them have disappeared while others have appeared anew, with their abundance ratio fluctuating significantly. Over the past 50 years, 15 new species have been recorded in the Transvolga fauna. One-third of them have come from the south and represent the desert faunal assemblage, while two-thirds are representatives of the forest assemblage that have come from the north.     

Statistical Analysis of the Influence of a Disturbance Factor on Formation of the Spatial Structure of the Great Bustard (<Emphasis Type="Italic">Otis tarda</Emphasis> L.) (Otididae,Aves) Population in the Trans-Volga Region

This paper examines the influence of the location of settlements, railroads, and highways on the spatial structure of the Otis tarda population in the Trans-Volga region that was studied in the years 1998–2016 in a model area of 12000 km² that is located in the southern part of the Saratov Trans-Volga region. The zone of the impact made by our estimated disturbance factor due to the movement of people and a variety of ground vehicles along various-purpose roads on the territorial distribution of bustards in autumn can be denoted as a 300–500 m width band on both sides of the transport communications. Shelterbelts that were created along transport communications render a beneficial effect on the distribution of O. tarda and reduce the influence of the disturbance factor. Furthermore, crop rotation fields with side sizes of more than 1 km can be considered a factor that compensates for the anxiety of birds. We have found that in the Saratov Trans-Volga region, because of the large size of crop rotation fields and significant development of roadside and shelter belts, no special measures are required to protect O. tarda such as restrictions on the movement of people and vehicles over the territory where this species lives.     

Segment duplications in the human genome

The review considers the structure, evolution, and possible mechanisms of spreading of intrachromosomal and interchromosomal segment duplications (SD), which account for more than 5% of the human genome. Most SD are mosaic and consist of multiple modules, which occur in several copies in different genome regions. SD are preferentially located in pericentric and subtelomeric regions, which are least studied on the human chromosomes. Homologous recombination between SD results in various chromosome rearrangements, contributing to the genome instability and the origin of several human hereditary disorders.     

Effect of pineal peptide on parameters of the biological age and life span in mice

Female CBA mice were injected with s.c. synthetic tetrapeptide Epithalon from a 6-month age until death. The drug failed to affect the body weight or food consumption, physical activity or behavioural parameters. However, it slowed down the age-related switching off of the estrus function, decreased body temperature, decelerated free redical processes, prolonged the mice life span with an accompanying drop in spontaneous tumour incidence.     

Novel reference gene RPN1 for normalization of quantitative data in lung and kidney cancer

Quantitative methods of gene expression analysis in tumors require accurate data normalization, which allows comparison of different mRNA/cDNA samples with unknown concentration. For this purpose reference genes with stable expression level (such as GAPDH, ACTB, HPRT1, TBP) are used. The choice of appropriate reference genes is still actual because well-known reference genes are not suitable for certain cancer types frequently and their unreasonable use without additional tests lead to wrong conclusions. We have developed the bioinformatic approach and selected a new potential reference gene RPN1 for lung and kidney tumors. This gene is located at the long arm of chromosome 3. Our method includes mining of the dbEST and Oncomine databases and functional analysis of genes. The RPN1 was selected from 1500 candidate housekeeping genes. Using comparative genomic hybridization with NotI-microarrays we found no methylation, deletions and/or amplifications at the RPN1-containing locus in 56 non-small cell lung and 42 clear cell renal cancer samples. Using RT-qPCR we showed low variability of RPN1 mRNA level comparable to those of reference genes GAPDH and GUSB in lung and kidney cancer. The mRNA levels of two target genes coding hyalouronidases--HYAL1 and HYAL2--were estimated and normalized relative to pair RPN1--GAPDH genes for lung cancer and RPN1--GUSB for kidney cancer. These combinations were shown to be optimal for obtaining accurate and reproducible data. All obtained results allow us to suggest RPN1 as novel reference gene for quantitative data normalization in gene expression studies for lung and kidney cancers.     

State of Birch Outliers in the Southern Trans-Urals in the Zone of High Anthropogenic Load on Natural Ecosystems

Biology Bulletin - Abstract—The results of our study of the ecosystem diversity and state of forest outliers located in the Shchuchanskii district of the Kurgan region are presented. The...