Molecular evidence in <Emphasis Type=Italic>Diplotaxis</Emphasis> (Brassicaceae) suggests a Quaternary origin of the Cape Verdean flora

In comparison with other Macaronesian Islands (e.g., the Canary Islands), the Cape Verde Islands have received little attention in terms of plant molecular phylogenetic studies, which might also elucidate the general floristic history of this archipelago. The Cape Verdean vascular plant flora (ca. 12% endemics) has traditionally been regarded as relict of a former subtropical Tertiary flora. In contrast, it has been postulated more recently that the flora is much younger and of Pleistocene origin. To test these hypotheses, we have produced molecular phylogenies associated with a molecular clock approach, sampling all nine Cape Verdean endemic Diplotaxis taxa and 21 accessions representing the D. harra complex from across its distributional range. Analyzing three molecular markers from the nuclear and chloroplast genome, we provide evidence that the Cape Verdean endemic Diplotaxis originated from North African D. harra populations in Pleistocene times, putatively linked to the genesis of the (western) Sahara. This adds to the emerging picture that the present Cape Verdean flora is of Pleistocene origin.     

Nuclear, Virescent Mutants of Zea mays L. with High Levels of Chlorophyll (a/b) Light-Harvesting Complex during Thylakoid Assembly

We have found nuclear, recessive mutants in Zea mays L. where assembly of the major chlorophyll (a/b) light-harvesting complex (LHC) was not delayed relative to most other thylakoid protein complexes during thylakoid biogenesis. This contrasts with the normal development of maize chloroplasts (NR Baker, R Leech 1977 Plant Physiol 60: 640-644). All four mutants examined were allelic and virescent, and displayed visibly higher yields of leaf Chl fluorescence during greening. Fully greened mutants had normal leaf Chl fluorescence yield and normal levels of LHC, and grew to maturity under field conditions. Therefore, delayed LHC assembly is not an obligate feature of thylakoid differentiation.

Assigning the molecular basis for the mutation should provide information concerning reguation of LHC assembly. Several possibilities are discussed. The pleiotropic mutant phenotype is not attributable to defects in thylakoid glycerolipid synthesis. Thylakoids isolated from greening mutant leaf sections had elevated glycerolipid/Chl ratios. In addition, both the molar distribution and acyl composition of four major glycerolipids were normal for developing mutant thylakoids.

     

Mating system shifts and transposable element evolution in the plant genus Capsella

Background

Despite having predominately deleterious fitness effects, transposable elements (TEs) are major constituents of eukaryote genomes in general and of plant genomes in particular. Although the proportion of the genome made up of TEs varies at least four-fold across plants, the relative importance of the evolutionary forces shaping variation in TE abundance and distributions across taxa remains unclear. Under several theoretical models, mating system plays an important role in governing the evolutionary dynamics of TEs. Here, we use the recently sequenced Capsella rubella reference genome and short-read whole genome sequencing of multiple individuals to quantify abundance, genome distributions, and population frequencies of TEs in three recently diverged species of differing mating system, two self-compatible species (C. rubella and C. orientalis) and their self-incompatible outcrossing relative, C. grandiflora.

Results

We detect different dynamics of TE evolution in our two self-compatible species; C. rubella shows a small increase in transposon copy number, while C. orientalis shows a substantial decrease relative to C. grandiflora. The direction of this change in copy number is genome wide and consistent across transposon classes. For insertions near genes, however, we detect the highest abundances in C. grandiflora. Finally, we also find differences in the population frequency distributions across the three species.

Conclusion

Overall, our results suggest that the evolution of selfing may have different effects on TE evolution on a short and on a long timescale. Moreover, cross-species comparisons of transposon abundance are sensitive to reference genome bias, and efforts to control for this bias are key when making comparisons across species.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-602) contains supplementary material, which is available to authorized users.     

A simple method for staining nuclei of mature and germinated maize pollen

A sugar acetocarmine staining technique has been developed for staining the sperm and vegetative nucleus of mature and germinated maize pollen grains. This procedure is simple, stable and highly repeatable. The physiological properties of the mature maize pollen grains are first adjusted by using an in vitro germinating culture solution. This solution is 15% sucrose and contains 360 ppm calcium chloride dihydrate, and 120 ppm boric acid. One part fresh pollen grains is uniformly mixed with nine parts of the solution and left at room temperature for at least 5 hr. One part of this solution is then mixed with two parts of regular acetocarmine stain and left overnight. The color of this mixture is pinkish red or raspberry. The sugar in the mixture helps to increase color contrast between the pollen cytoplasm (light pink) and the nuclei (reddish purple), decreases the frequency of burst pollen, increases pollen expansion, stabilizes pollen figures and automatically seals the coverglass.     

The colonizing history ofCapsella in Patagonia (South America)—Molecular and adaptive significance

Twenty-two provenances ofCapsella bursa-pastoris (Brassicaceae) from Patagonia and Tierra del Fuego and 13 provenances from the middle part of South America have been investigated for phenotypic traits (flowering, growth form parameters, fruit characters), isozymes (AAT, GDH, LAP), and RAPDs.Capsella is native to Europe and was introduced into South America in the 16th century. In Patagonia, we detected 23 different multilocus associations, but only five occurred in a frequency of more than 5%. By comparison with the geographic distribution patterns of multilocus genotypes in Europe, we inferred the ancestral European gene pools and the possible introduction routes. A particular multilocus genotype (MMG) was most frequent in the investigated area, and is native to the Iberian Peninsula. This genotype was with all probability introduced by Spaniards into central and northern South America, and it could have reached Patagonia from the north step by step. Other genotypes probably used a direct route from Europe, most likely via British sheep farmers in the second half of the 19th century. Rare genotypes in Patagonia may have been introduced recently by chance, or might be due to multilocus rearrangements in connection with rare outcrossing events. RAPD markers helped to trace colonial gene pools outside Europe and ancestral European gene pools and support the isozyme studies. Correlations between the life history traits and allozyme markers give evidence of the role adaptation may play in the colonizing process.     

Hybridisation between oilseed rape (Brassica napus) and tetraploid Brassica rapa under field conditions

Cross-compatible relatives of crop species contribute to the uncertainty regarding the potential risk of transgene escape from genetically modified varieties. The most successful crossing partner of oilseed rape (Brassica napus L.) is diploid Brassica rapa L. Variation of ploidy level among B. rapa cultivars has, until recently, been neglected in the context of gene flow and hybridisation with oilseed rape. We estimated the extent of hybridisation between autotetraploid B. rapa varieties (female) and B. napus (pollen donor) under experimental field conditions. Morphology, variation of relative DNA amount, and microsatellite markers were used to distinguish between intraspecific offspring of tetraploid B. rapa and interspecific hybrids with B. napus. Of 517 seed progenies of tetraploid B. rapa, 45 juvenile plants showed species specific morphological traits of oilseed rape. The detection of putative hybrids based on variation in relative DNA amounts was problematic due to the occurrence of aneuploidy. In total, 84 offspring showed relative DNA amounts deviating from tetraploid B. rapa, four of which were hexaploids. Of the 205 offspring analysed at three microsatellite loci, 67 had oilseed rape alleles. Based on molecular evidence a minimum hybridisation rate of 13.0% was estimated. A few mother plants accounted for the majority of hybrids. The mean pollen viability of hybrids between B. napus and tetraploid B. rapa (80.6%) was high in comparison with mean pollen viability of triploid hybrids between B. napus and diploid B. rapa. Therefore, the occurrence of tetraploid B. rapa should be taken into consideration when estimating the likelihood of gene flow from oilseed rape to close relatives at the landscape level. Tetraploid B. rapa is a common component of several seed mixtures and establishes feral populations in northwest Germany. Assuming a similar abundance of diploid and tetraploid B. rapa, gene flow from B. napus to tetraploid may be more likely than gene flow to diploid B. rapa.