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1.
NICOLAS RAY 《Molecular ecology resources》2005,5(1):177-180
pathmatrix is a tool used to compute matrices of effective geographical distances among samples using a least‐cost path algorithm. This program is dedicated to the study of the role of the environment on the spatial genetic structure of populations. Punctual locations (e.g. individuals) or zones encompassing sample data points (e.g. demes) are used in conjunction with a species‐specific friction map representing the cost of movement through the landscape. Matrices of effective distances can then be exported to population genetic software to test, for example, for isolation by distance. pathmatrix is an extension to the geographical information system (GIS) software arcview 3.x. 相似文献
2.
ALAIN THIÉRY NICOLAS RABET GABRIEL NÈVE 《Biological journal of the Linnean Society. Linnean Society of London》2007,90(1):55-60
The shape of the resting eggs of a large branchiopod crustacean, the Anostraca Tanymastix stagnalis , is represented very accurately by analytical expressions. The occurrence of atypical shape of some T. stagnalis eggs may be viewed as a simple change of the analytical expression describing the usual egg shape. Their unusual shape may be explained by a higher embryo volume within an envelope of a given size. Biological implications are briefly discussed and hypothesized in an evolutionary point of view. © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 90 , 55–60. 相似文献
3.
Effects of Drought on Partitioning of Nitrogen in Two Wheat Varieties Differing in Drought-tolerance 总被引:2,自引:0,他引:2
NICOLAS MARC E.; SIMPSON RICHARD J.; LAMBERS HANS; DALLING MICHAEL J. 《Annals of botany》1985,55(5):743-754
A model was constructed to describe the translocation and partitioningof nitrogen on the seventh day after anthesis for well-wateredand droughted plants of two wheat varieties (Triticum aestivumL. cv. Warigal and Condor). The glasshouse-grown plants weredetillered so that a simplified model could be derived for themain stem. A 9-d drought treatment was imposed just after anthesisand this coincided with the period of endosperm cell divisionin the grains. Warigal, which had a higher grain yield thanCondor under drought, absorbed up to 15-times more nitrogenand translocated 1.5-fold more nitrogen to the shoot via thexylem. In both varieties, nitrogen redistributed from vegetativeorgans accounted for more than 60 per cent in control and 70per cent in droughted plants of the nitrogen needed for eargrowth. The net loss of nitrogen increased by 4-3 per cent inthe leaves, but decreased by 60 per cent in the stem under drought.Stem and roots appeared to play an important role in the nitrogeneconomy of droughted plants: less nitrogen was translocateddirectly to the grains from the senescing leaves and 4060per cent more nitrogen was translocated to the roots. Nearlyall the nitrogen reaching the roots in the phloem was reloadedinto the xylem stream and translocated back to the shoot. Thetransfer of nitrogen through the stem was reduced under droughtand this resulted in a constant C:N ratio of the grains whichmay be important in the regulation of endosperm cell division. Triticum aestivum L., wheat, drought, nitrogen, senescence, translocation 相似文献
4.
Socio-genetic structure of mound-building mice, Mus spicilegus, in autumn and early spring 总被引:1,自引:0,他引:1
CHANTAL POTEAUX NICOLAS BUSQUET PATRICK GOUAT KRISZTIÁN KATONA CLAUDE BAUDOIN 《Biological journal of the Linnean Society. Linnean Society of London》2008,93(4):689-699
Mus spicilegus has become a popular biological model species in the last decade because of the evolutionary interest of its behavioural particularities (the building of mounds, bi-parental care and monogamous mating system). The genetic structure of M. spicilegus populations should reflect those life-history traits. Although many studies have reported on mound-building mouse populations in the field or in a semi-natural enclosure, only one used hyper variable genetic markers to assess parentage and social structure. In the present study conducted in Hungary, we analysed individuals from seven highly populous mounds in autumn with the set of loci used in a previous study. Our results confirmed that mounds are inhabited by juveniles from several parental units, but revealed population differences. In a capture–recapture field session in spring, we assessed genetic relationships between individuals after dispersal from the mounds, the other key moment of the life cycle of this species. The results indicate that the social structure at this moment reflects a transition phase between the large over-wintering groups and the monogamous pairs described later in the year. Social bounds forged during the long winter cohabitation may have lasting effects on social and genetic structure of this species. This scenario is discussed in respect of the available literature on this species as well as other species. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 689–699. 相似文献
5.
NICOLAS FEAU MARIE‐JOSE BERGERON DAVID L. JOLY FABIEN ROUSSEL RICHARD C. HAMELIN 《Molecular ecology resources》2007,7(6):1222-1228
We report the discovery, characterization and validation of 118 single nucleotide polymorphisms (SNPs) for poplar leaf rust Melampsora medusae f. sp. deltoidae identified using a gene‐targeted approach in an expressed sequence tag (EST) library. We developed a genotyping assay using the iPLEX? primer extension method for two multiplex assays of 28 and 22 SNPs. 相似文献
6.
FLUXNET and modelling the global carbon cycle 总被引:3,自引:0,他引:3
ANDREW D. FRIEND ALMUT ARNETH† NANCY Y. KIANG‡ MARK LOMAS§ JÉRÔME OGÉE¶ CHRISTIAN RÖDENBECK STEVEN W. RUNNING JEAN-DIEGO SANTAREN STEPHEN SITCH†† NICOLAS VIOVY F. IAN WOODWARD§ SÖNKE ZAEHLE†† 《Global Change Biology》2007,13(3):610-633
Measurements of the net CO2 flux between terrestrial ecosystems and the atmosphere using the eddy covariance technique have the potential to underpin our interpretation of regional CO2 source–sink patterns, CO2 flux responses to forcings, and predictions of the future terrestrial C balance. Information contained in FLUXNET eddy covariance data has multiple uses for the development and application of global carbon models, including evaluation/validation, calibration, process parameterization, and data assimilation. This paper reviews examples of these uses, compares global estimates of the dynamics of the global carbon cycle, and suggests ways of improving the utility of such data for global carbon modelling. Net ecosystem exchange of CO2 (NEE) predicted by different terrestrial biosphere models compares favourably with FLUXNET observations at diurnal and seasonal timescales. However, complete model validation, particularly over the full annual cycle, requires information on the balance between assimilation and decomposition processes, information not readily available for most FLUXNET sites. Site history, when known, can greatly help constrain the model‐data comparison. Flux measurements made over four vegetation types were used to calibrate the land‐surface scheme of the Goddard Institute for Space Studies global climate model, significantly improving simulated climate and demonstrating the utility of diurnal FLUXNET data for climate modelling. Land‐surface temperatures in many regions cool due to higher canopy conductances and latent heat fluxes, and the spatial distribution of CO2 uptake provides a significant additional constraint on the realism of simulated surface fluxes. FLUXNET data are used to calibrate a global production efficiency model (PEM). This model is forced by satellite‐measured absorbed radiation and suggests that global net primary production (NPP) increased 6.2% over 1982–1999. Good agreement is found between global trends in NPP estimated by the PEM and a dynamic global vegetation model (DGVM), and between the DGVM and estimates of global NEE derived from a global inversion of atmospheric CO2 measurements. Combining the PEM, DGVM, and inversion results suggests that CO2 fertilization is playing a major role in current increases in NPP, with lesser impacts from increasing N deposition and growing season length. Both the PEM and the inversion identify the Amazon basin as a key region for the current net terrestrial CO2 uptake (i.e. 33% of global NEE), as well as its interannual variability. The inversion's global NEE estimate of −1.2 Pg [C] yr−1 for 1982–1995 is compatible with the PEM‐ and DGVM‐predicted trends in NPP. There is, thus, a convergence in understanding derived from process‐based models, remote‐sensing‐based observations, and inversion of atmospheric data. Future advances in field measurement techniques, including eddy covariance (particularly concerning the problem of night‐time fluxes in dense canopies and of advection or flow distortion over complex terrain), will result in improved constraints on land‐atmosphere CO2 fluxes and the rigorous attribution of mechanisms to the current terrestrial net CO2 uptake and its spatial and temporal heterogeneity. Global ecosystem models play a fundamental role in linking information derived from FLUXNET measurements to atmospheric CO2 variability. A number of recommendations concerning FLUXNET data are made, including a request for more comprehensive site data (particularly historical information), more measurements in undisturbed ecosystems, and the systematic provision of error estimates. The greatest value of current FLUXNET data for global carbon cycle modelling is in evaluating process representations, rather than in providing an unbiased estimate of net CO2 exchange. 相似文献
7.
DAVID BODIE CAROL A. BENNETT-CLARKE KATHLEEN DAVIS JENNIFER P. POSTELWAITE NICOLAS L. CHIAIA ROBERT W. RHOADES 《Somatosensory & motor research》2013,30(3):168-180
Previous experiments from this laboratory have indicated that transection of the infraorbital nerve (ION, the trigeminal \[V] branch that supplies the mystacial vibrissae follicles) at birth and in adulthood has markedly different effects on galanin immunoreactivity in the V brainstem complex. Adult nerve transection increases galanin immunoreactivity in the superficial layers of V subnucleus caudalis (SpC) only, while neonatal nerve transection results in increased galanin expression in vibrissae-related primary afferents throughout the V brainstem complex. The present study describes the distribution of binding sites for this peptide in the mature and developing V ganglion and brainstem complex and determines the effects of neonatal and adult ION damage and the associated changes in galanin levels upon their distribution and density. Galanin binding sites are densely distributed in all V brainstem subnuclei and are particularly dense in V subnucleus interpolaris and the superficial layers of SpC. They are present at birth (P-0) and their distribution is similar to that in adult animals. Transection of the ION in adulthood and examination of brainstem 7 days later indicated marked reductions in the density of galanin binding sites in the V brainstem complex. With the exception of the superficial laminae of SpC, the same reduction in density remained apparent in rats that survived 45 days after nerve cuts. Transection of the ION on P-0 resulted in no change in the density of galanin binding sites in the brainstem after either 7 or 60 days survival. These results indicate that densely distributed galanin binding sites are present in the V brainstem complex of both neonatal and adult rats, that they are located in regions not innervated by galanin-positive axons, and that their density is not significantly influenced by large lesion-induced changes in the primary afferent content of their natural ligand. 相似文献
8.
NICOLAS HARMEL RAKI ALMOHAMAD MARIE-LAURE FAUCONNIER PATRICK DU JARDIN FRANCOIS VERHEGGEN MICHEL MARLIER ERIC HAUBRUGE FREDERIC FRANCIS 《Insect Science》2007,14(1):57-63
To cope with pathogen and insect attacks, plants develop different mechanisms of defence, in both direct (physical and chemical) and indirect ways (attractive volatiles to entomophagous beneficials). Plants are then able to express traits that facilitate "top-down" control of pests by attracting herbivore predators. Here we investigate the indirect defence mechanism of potato plants by analyzing the volatile patterns of both healthy and aphid- infested plants. Important changes in the emitted terpene pattern by the Myzus persicae infested host plant were observed. Using Solid Phase MicroExtraction (SPME) and GC-MS, the (E)-fl-farnesene (EBF) appeared to be emitted by aphid-infested potato and not by healthy plants. To assess the infochemical role of these volatile releases after aphid damage on the aphidophagous predators Episyrphus balteams, the hoverfly foraging behavior was assessed using the Observer 5.0 software (Noldus, Wageningen, The Netherlands). Aphidfree potato plants were also used as a control volatile source in the predator behavioral study. While aphid-infested plants induced efficient searching and acceptation behaviors leading to egg-laying, no kairomonal effect of healthy potato plants was observed, leading to longer immobility durations and shorter searching periods in the net cage. High oviposition rate of E. balteatus was observed when aphid-infested potato was used (mean of 48.9 eggs per laying and per female). On the other hand, no egg was produced by the hoverfly on healthy aphid-free plants. The E. balteatus foraging and reproductive behaviors according to the volatile emission from aphid-infested plants are discussed in relation to the potential use of active infochemical molecules in integrated aphid pest management. 相似文献
9.
The very diverse social systems of sweat bees make them interesting models to study social evolution. Here we focus on the dispersal behaviour and social organization of Halictus scabiosae , a common yet poorly known species of Europe. By combining field observations and genetic data, we show that females have multiple reproductive strategies, which generates a large diversity in the social structure of nests. A detailed microsatellite analysis of 60 nests revealed that 55% of the nests contained the offspring of a single female, whereas the rest had more complex social structures, with three clear cases of multiple females reproducing in the same nest and frequent occurrence of unrelated individuals. Drifting among nests was surprisingly common, as 16% of the 122 nests in the overall sample and 44% of the nests with complex social structure contained females that had genotypes consistent with being full-sisters of females sampled in other nests of the population. Drifters originated from nests with an above-average productivity and were unrelated to their nestmates, suggesting that drifting might be a strategy to avoid competition among related females. The sex-specific comparison of genetic differentiation indicated that dispersal was male-biased, which would reinforce local resource competition among females. The pattern of genetic differentiation among populations was consistent with a dynamic process of patch colonization and extinction, as expected from the unstable, anthropogenic habitat of this species. Overall, our data show that H. scabiosae varies greatly in dispersal behaviour and social organization. The surprisingly high frequency of drifters echoes recent findings in wasps and bees, calling for further investigation of the adaptive basis of drifting in the social insects. 相似文献
10.
ANDREW V. BRADLEY FRANCE F. GERARD NICOLAS BARBIER GRAHAM P. WEEDON LIANA O. ANDERSON CHRIS HUNTINGFORD LUIZ E. O. C. ARAGÃO PRZEMYSLAW ZELAZOWSKI EGIDIO ARAI 《Global Change Biology》2011,17(6):2245-2260
In tropical areas, Dynamic Global Vegetation Models (DGVMs) still have deficiencies in simulating the timing of vegetation phenology. To start addressing this problem, standard Fourier‐based methods are applied to aerosol screened monthly remotely sensed phenology time series (Enhanced Vegetation Index, EVI) and two major driving factors of phenology: solar radiation and precipitation (for March 2000 through December 2006 over northern South America). At 1 × 1 km scale using, power (or variance) spectra on good quality aerosol screened time series, annual cycles in EVI are detected across 58.24% of the study area, the strongest (largest amplitude) occurring in the savanna. Terra Firme forest have weak but significant annual cycles in comparison with savannas because of the heterogeneity of vegetation and nonsynchronous phenological events within 1 × 1 km scale pixels. Significant annual cycles for radiation and precipitation account for 86% and 90% of the region, respectively, with different spatial patterns to phenology. Cross‐spectral analysis was used to compare separately radiation with phenology/EVI, precipitation with phenology/EVI and radiation with precipitation. Overall the majority of the Terra Firme forest appears to have radiation as the driver of phenology (either radiation is in phase or leading phenology/EVI at the annual scale). These results are in agreement with previous research, although in Acre, central and eastern Peru and northern Bolivia there is a coexistence of ‘in phase’ precipitation over Terra Firme forest. In contrast in most areas of savanna precipitation appears to be a driver and savanna areas experiencing an inverse (antiphase) relationship between radiation and phenology is consistent with inhibited grassland growth due to soil moisture limitation. The resulting maps provide a better spatial understanding of phenology–driver relationships offering a bench mark to parameterize ecological models. 相似文献