Study of morphological and symbiotic traits during the ontogeny of supernodular and hypernodular pea mutants

Morphological (plant height and vegetative biomass amount) and symbiotic (number of nodules and nitrogenase activity) traits of six symbiotic pea mutants and the original cultivar Rondo were studied at different vegetation periods. Of the mutants studied, one (K10a) was supernodular and the remaining five (K1a, K2a, K5a, K7a, and K27a) were hypemodular. Essential distinctions in the absolute values and time course of the changes in individual morphological and symbiotic traits of different pea mutants were demonstrated. The supernodular type is inferior to the original cultivar in plant height and production of vegetative biomass, but exceeds it in nodulation and nitrogen fixation. The hypernodular mutants either surpass the original cultivar with respect to the production capacity or display similar results. The symbiotic traits—number of nodules and nitrogen fixation activity—of these mutants are higher compared with the Rondo cultivar. The mutants K1a, K2a, and K27a were demonstrated to be useful in breeding pea for an increase in nitrogen fixation.     

Prediction of the three-dimensional structure of aflatoxin of Aspergillus flavus by homology modelling

Aflatoxins are polyketide-derived secondary metabolites produced by Aspergillus spp. The toxic effects of aflatoxins have adverse consequences for human health and agricultural economics. The aflR gene, a regulatory gene for aflatoxin biosynthesis, encodes a protein containing a zinc-finger DNA-binding motif. AFLR-Protein three-dimensional model was generated using Robetta server. The modeled AFLR-Protein was further optimization and validation using Rampage. In the simulations, we monitored the backbone atoms and the C-α-helix of the modeled protein. The low RMSD and the simulation time indicate that, as expected, the 3D structural model of AFLR-protein represents a stable folding conformation. This study paves the way for generating computer molecular models for proteins whose crystal structures are not available and which would aid in detailed molecular mechanism of inhibition of aflatoxin.     

Study of dominant symbiotic mutants of pea <Emphasis Type="Italic">Pisum sativum</Emphasis> L.

Phenogenetic studies of four symbiotic hypernodulating mutants of pea (Pisum sativum L.) induced from seeds of cultivar Rodno by chemical mutagen EMS were conducted. All mutants have improved symbiotic traits, i.e., an increased number of root nitrogen fixating nodules and high activity of nitrogenase. Symbiotic traits were shown to be inherited dominantly. Mutants grown in the field or in a greenhouse showed superiority over the original cultivar in productivity. An important feature of hypernodulating mutants was found that is responsible for the appearance of high-height productive plants in F₂ after crossing mutants and the original cultivar. Constant lines retaining the ability for high-level production up to the F₅ generation were created based on individual plants.     

Mapping the amino acid properties of constituent nucleoporins onto the yeast nuclear pore complex

Visualization of molecular structures aids in the understanding of structural and functional roles of biological macromolecules. Macromolecular transport between the cell nucleus and cytoplasm is facilitated by the nuclear pore complex (NPC). The ring structure of the NPC is large and contains several distinct proteins (nucleoporins) which function as a selective gate for the passage of certain molecules into and out of the nucleus. In this note we demonstrate the utility of a python code that allows direct mapping of the physiochemical properties of the constituent nucleoporins on the scaffold of the yeast NPC׳s cytoplasmic view. We expect this tool to be useful for researchers to visualize the NPC based on their physiochemical properties and how it alters when specific mutations are introduced in one or more of the nucleoporins. The code developed using Python is available freely from the authors.     

Mowing management and density dependence in meadow passerine hatching success

Capsule Improving habitat quality through late or intermittent mowing may increase passerine population density without reducing reproductive success.

Aim To describe the relationship between passerine territory density (TD) and Whinchat Saxicola rubetra and Yellow Wagtail Motacilla flava hatching success, under different management regimes.

Methods TD was defined by the Territory Mapping method in nine sites selected in five French flood plains, in four intermittently mown meadows in Russia and in four additional French sites where mowing was partially postponed. Hatching success was assessed by the observation of prey carrying. Generalized Linear Mixed Models were used to analyse the influence on hatching rates of mowing management, early mowing and TD. Linear Mixed Models were used to study the effect of mowing management on TD.

Results In French early mown meadows, TD affected reproductive success. Higher hatching rates and TD were observed in Russia. Similar results in French study sites with postponed mowing confirmed the influence of mowing management on carrying capacity.

Conclusion In west-European grassland systems, late or intermittently mown patches within or at the edge of meadow areas, with potentially improved invertebrate-prey availability, should help to sustain bird demography and improve the efficiency of current conservation programmes.     

Stereoselectivity of binding of alpha-(N-benzylamino)benzylphosphonic acids to prostatic acid phosphatase

The inhibition effects of enantiomerically pure alpha-(N-benzylamino)benzylphosphonic acids and their derivatives on human prostatic acid phosphatase have been investigated. As expected, (R)-alpha-(N-benzylamino)benzylphosphonic acid demonstrated higher affinity for the enzyme than (S)-enantiomer. At the same time, (1R,2S)-phenyl[(1-phenylethyl)amino]methylphosphonic acid was found to be a significantly weaker inhibitor than its (1S,2R)-analogue. The enantioselectivity has been explained using a molecular modeling approach by computational docking of inhibitors into active center of prostatic acid phosphatase.     

Increase in anthraquinone content in Rubia cordifolia cells transformed by rol genes does not involve activation of the NADPH oxidase signaling pathway

It has been reported that rol plant oncogenes located in Ri-plasmids of Agrobacterium rhizogenes activated synthesis of secondary metabolites in the transformed plant cells. The activator mechanism is still unknown. In this work, we studied whether the NADPH oxidase-signaling pathway, which regulates the synthesis of defense metabolites in plants, is involved in the activator function of the rol genes. It was demonstrated that the transformation of Rubia cordifolia cells by the rolB and rolC genes caused an induction of biosynthesis of anthraquinone-type phytoalexins. Inhibition studies revealed a striking difference between the rolC and rolB transformed cultures in their sensitivity to Ca²⁺ channel blockers and calcium deficiency. The rolC culture displayed lowered resistance to the inhibitors compared to the non-transformed culture, while the rolB culture was more resistant to the treatment. The assumption was made that the oncogenic potential of rol genes is realized through the alteration of calcium balance in the plant cells. Anthraquinone production was not inhibited in the non-transformed and transformed cultures by Ca²⁺ channel blockers, as well as by diphenylene iodonium, an inhibitor of NADPH oxidase, and by the protein kinase inhibitor staurosporine. These results indicate that the induction of anthraquinone production in transgenic cultures does not involve the activation of Ca²⁺-dependent NADPH oxidase pathway.