木聚糖酶EvXyn11TS耐热性与其N端二硫键的相关性分析

[目的]以糖苷水解酶11家族耐热木聚糖酶EvXyn11TS为研究对象,定点突变其编码基因Syxyn11,揭示EvXyn11TS耐热性与其N端二硫键的相关性.[方法]对不同来源的、与EvXyn11TS一级结构相似度较高的若干11家族木聚糖酶进行多序列同源比对,发现只有耐热的EvXyn11TS在其N端存在一个二硫键(Cys5-Cys32);运用分子动力学模拟预测该N端二硫键存在与否对木聚糖酶热稳定性的影响.以人工合成的Syxyn11为母本,采用PCR技术将其编码Cys5的密码子TGT突变为编码Thr5的ACT,构建去除了N端二硫键的突变酶(EvXyn11M)的编码基因Syxyn11M;分别将Syxyn11和Syxyn11M在毕赤酵母GS115中进行表达,并分析表达产物EvXyn 11 TS和EvXyn11M的温度和pH特性.[结果]酶学性质研究结果表明:EvXyn11M的最适温度Topt由突变前的85℃降至70℃;EvXyn11TS在90℃的半衰期t1/290为32 min,而EvXyn11M在70℃的半衰期t1/270仅为8.0 min.[结论]运用分子动力学模拟预测了N端二硫键对EvXyn11TS耐热性的重要作用,并通过定点突变验证之,为其它与耐热EvXyn11TS一级结构相似的、11家族常温高比活性木聚糖酶的耐热性改造提供了新的技术策略.     

Identification of microRNAs of the herpesvirus family

Epstein-Barr virus (EBV or HHV4), a member of the human herpesvirus (HHV) family, has recently been shown to encode microRNAs (miRNAs). In contrast to most eukaryotic miRNAs, these viral miRNAs do not have close homologs in other viral genomes or in the genome of the human host. To identify other miRNA genes in pathogenic viruses, we combined a new miRNA gene prediction method with small-RNA cloning from several virus-infected cell types. We cloned ten miRNAs in the Kaposi sarcoma-associated virus (KSHV or HHV8), nine miRNAs in the mouse gammaherpesvirus 68 (MHV68) and nine miRNAs in the human cytomegalovirus (HCMV or HHV5). These miRNA genes are expressed individually or in clusters from either polymerase (pol) II or pol III promoters, and share no substantial sequence homology with one another or with the known human miRNAs. Generally, we predicted miRNAs in several large DNA viruses, and we could neither predict nor experimentally identify miRNAs in the genomes of small RNA viruses or retroviruses.     

Improving the thermostability of a mesophilic family 10 xylanase,AuXyn10A,from Aspergillus usamii by in silico design

To improve the thermostability of a mesophilic GH family 10 xylanase, AuXyn10A, from Aspergillus usamii E001, its modification was performed by in silico design. Based on the comparison of B-factor values, a mutant xylanase ATXyn10 was predicted by substituting a segment YP from Tyr²⁵ to Pro³⁴ of AuXyn10A with the corresponding one from Asn²⁴ to Ala³² of TaXyn10, a thermophilic GH family 10 xylanase from Thermoascus aurantiacus. Analysis of a TaXyn10 crystal structure indicated that there is a close interaction between segments YP and FP. For that reason, another mutant xylanase ATXyn10^M was designed by mutating Ser²⁸⁶ and His²⁸⁸ of ATXyn10 into the corresponding Gly²⁸⁵ and Phe²⁸⁷ in the FP of TaXyn10. Then, two ATXyn10- and ATXyn10^M-encoding genes, ATxyn10 and ATxyn10 ^M, were expressed in Pichia pas toris GS115. The temperature optimum of recombinant (re) ATXyn10^M was 60 °C, 10 °C higher than that of reAuXyn10A. Its thermal inactivation half-life (t _1/2) at 55 °C was 10.4-fold longer than that of reAuXyn10A. As compared with reAuXyn10A, reATXyn10^M displayed a slight decrease in K _m value and a significant increase in V _max value from 6,267 to 8,870 U/mg.     

Bimutation breeding of Aspergillus niger strain for enhancing β-mannanase production by solid-state fermentation

A parent strain Aspergillus niger LW-1 was mutated by the compound mutagenesis of vacuum microwave (VMW) and ethyl methane sulfonate (EMS). A mutant strain, designated as A. niger E-30, with high- and stable-yield β-mannanase was obtained through a series of screening. The β-mannanase activity of the mutant strain E-30, cultivated on the basic fermentation medium at 32 °C for 96 h, reached 36,675 U/g dried koji, being 1.98-fold higher than that (18,501 U/g dried koji) of the parent strain LW-1. The purified E-30 β-mannanase, a glycoprotein with a carbohydrate content of 19.6%, had an apparent molecular weight of about 42.0 kDa by SDS–PAGE. Its optimal pH and temperature were 3.5 and 65 °C, respectively. It was highly stable at a pH range of 3.5–7.0 and at a temperature of 60 °C and below. The kinetic parameters K_m and V_max, toward locust bean gum and at pH 4.8 and 50 °C, were 3.68 mg/mL and 1067.5 U/mg, respectively. The β-mannanase activity was not significantly affected by an array of metal ions and EDTA, but strongly inhibited by Ag⁺ and Hg²⁺. In addition, the hydrolytic conditions of konjak glucomannan using the purified E-30 β-mannanase were optimized as follows: konjak gum solution 240 g/L (dissolved in deionized water), hydrolytic temperature 50 °C, β-mannanase dosage 120 U/g konjak gum, and hydrolytic time 8 h.     

Cloning and sequence analysis of a novel xylanase gene, Auxyn10A, from Aspergillus usamii

A full-length cDNA sequence, encoding a novel endo-1,4-β-d-xylanase (AuXyn10A) of Aspergillus usamii, was obtained by using rapid amplification of cDNA ends (RACE) methods and cloned into the pUCm-T vector, followed by DNA sequencing. The cDNA gene, designated as Auxyn10A, is 1,235 bp in length harboring 5′- and 3′-non-encoding regions, as well as an ORF of 984 bp that encodes a 19-aa signal peptide, a 6-aa propeptide and a 302-aa mature peptide with a calculated MW of 32,756 Da. The AuXyn10A displays high similarity to the xylanases of Aspergillus niger, Aspergillus kawachii and Aspergillus niger, members of the glycoside hydrolase family 10. Its three-dimensional structure was predicted using programs based on the crystal structure of Penicillium simplicissimum xylanase (1B30_A) from the family 10. The complete DNA gene was cloned from the genomic DNA of A. usamii using conventional PCR and hairpin structure-mediated PCR techniques. The DNA gene is 2,255 bp in length, containing a 510 bp of 5′-flanking promoter region and a 1,745 bp of downstream fragment that consists of ten exons and nine short introns ranging from 52 to 62 bp.     

人IL-29的定点突变及抗肿瘤活性初步分析

为探讨人白细胞介素-29(h IL-29)变异体的抗肿瘤活性,根据h IL-29成熟肽的生物信息学分析数据,采用大引物PCR方法对其肽链第33位赖氨酸、35位精氨酸的编码基因进行定点突变,获得的h IL-29变异体基因构建重组真核表达质粒转化毕赤酵母(Pichia pastoris)GS115进行发酵表达,经纯化得到重组人白细胞介素-29变异体蛋白(rh IL-29mut33,35)。经CCK-8法检测抗肿瘤细胞增殖的数据显示,rh IL-29mut33,35对肝癌细胞BEL7402、结肠癌细胞HCT8和胃癌细胞SGC7901的增殖均具有抑制作用,高剂量组对这3种肿瘤细胞的增殖抑制率分别为(30.99±1.58)%、(22.47±1.37)%和(32.05±2.02)%,而且抗增殖作用比野生型rh IL-29的更强(P0.01),表明变异体rh IL-29mut33,35具有潜在的医药开发价值。     

β-甘露聚糖酶AuMan5A/Af酶学性质的改善与其Asp320的相关性分析

【目的】为改善宇佐美曲霉5家族β-甘露聚糖酶(AuMan5A)的酶学性质,本实验室前期将AuMan5A底物结合凹槽内一个7肽(~(316)KSPDGGN~(322))组成的loop替换为烟曲霉5家族β-甘露聚糖酶对应的氨基酸片段(PSPNDHF),得到loop替换突变酶AuMan5A/Af。为揭示AuMan5A/Af酶学性质显著改善与其Asp~(320)的相关性,定点突变构建突变体AuMan5A/Af~(D320G)。【方法】采用大引物PCR技术将AuMan5A/Af基因(Auman5A/Af)中编码Asp~(320)的密码子GAC突变为Gly~(320)的GGT,构建出突变体基因Auman5A/Af~(D320G),并在毕赤酵母GS115中进行表达,分析表达产物AuMan5A/Af~(D320G)的酶学性质。【结果】AuMan5A/Af~(D320G)的最适温度T_(opt)为70.0℃,变性温度T_m为71.5℃,介于AuMan5A(T_(opt)=65.0℃,T_m=64.5℃)和AuMan5A/Af(T_(opt)=75.0℃,T_m=76.6℃)之间;在70.0℃的半衰期为40 min,高于AuMan5A的10 min,但较AuMan5A/Af的480 min显著缩短;比活性分别是AuMan5A和AuMan5A/Af的2.7和0.3倍;催化效率(k_(cat)/K_m)分别是AuMan5A和AuMan5A/Af的3.9和0.3倍。【结论】将Asp~(320)突变为Gly~(320)显著影响了AuMan5A/Af的酶学性质,证明了Asp~(320)对AuMan5A/Af温度特性改善、比活性和催化效率显著提高的重要作用。     

圆弧青霉PG37脂肪酶的生物信息学分析

利用生物信息学软件对GenBank上登录的圆弧青霉PG37碱性脂肪酶(LipⅠ)进行预测和分析。结果表明,PG37LipⅠ全肽含多个疏水区域,无明显跨膜结构域,定位于胞外,N-末端20个氨基酸为信号肽;PG37LipⅠ成熟肽是等电点为6.16的疏水性稳定蛋白质,包含一个Lipase_3的结构域,属于α/β水解酶超家族,含磷酸化位点等多种功能性位点,具有脂肪酸代谢的功能;α-螺旋和不规则卷曲是其蛋白质二级结构的主要结构元件,在三级结构中,Ser132-Asp188-His2413个氨基酸残基组成酶活性中心。     

Efficient Video Panoramic Image Stitching Based on an Improved Selection of Harris Corners and a Multiple-Constraint Corner Matching

Video panoramic image stitching is extremely time-consuming among other challenges. We present a new algorithm: (i) Improved, self-adaptive selection of Harris corners. The successful stitching relies heavily on the accuracy of corner selection. We fragment each image into numerous regions and select corners within each region according to the normalized variance of region grayscales. Such a selection is self-adaptive and guarantees that corners are distributed proportional to region texture information. The possible clustering of corners is also avoided. (ii) Multiple-constraint corner matching. The traditional Random Sample Consensus (RANSAC) algorithm is inefficient, especially when handling a large number of images with similar features. We filter out many inappropriate corners according to their position information, and then generate candidate matching pairs based on grayscales of adjacent regions around corners. Finally we apply multiple constraints on every two pairs to remove incorrectly matched pairs. By a significantly reduced number of iterations needed in RANSAC, the stitching can be performed in a much more efficient manner. Experiments demonstrate that (i) our corner matching is four times faster than normalized cross-correlation function (NCC) rough match in RANSAC and (ii) generated panoramas feature a smooth transition in overlapping image areas and satisfy real-time human visual requirements.