To What Extent Do Food Preferences Explain the Trophic Position of Heterotrophic and Mixotrophic Microbial Consumers in a Sphagnum Peatland?

Although microorganisms are the primary drivers of biogeochemical cycles, the structure and functioning of microbial food webs are poorly studied. This is the case in Sphagnum peatlands, where microbial communities play a key role in the global carbon cycle. Here, we explored the structure of the microbial food web from a Sphagnum peatland by analyzing (1) the density and biomass of different microbial functional groups, (2) the natural stable isotope (δ ¹³C and δ ¹⁵N) signatures of key microbial consumers (testate amoebae), and (3) the digestive vacuole contents of Hyalosphenia papilio, the dominant testate amoeba species in our system. Our results showed that the feeding type of testate amoeba species (bacterivory, algivory, or both) translates into their trophic position as assessed by isotopic signatures. Our study further demonstrates, for H. papilio, the energetic benefits of mixotrophy when the density of its preferential prey is low. Overall, our results show that testate amoebae occupy different trophic levels within the microbial food web, depending on their feeding behavior, the density of their food resources, and their metabolism (i.e., mixotrophy vs. heterotrophy). Combined analyses of predation, community structure, and stable isotopes now allow the structure of microbial food webs to be more completely described, which should lead to improved models of microbial community function.     

Investigation of Ag in the king scallop Pecten maximus using field and laboratory approaches

The bioaccumulation, tissue and subcellular distributions of Ag were investigated in the king scallop Pecten maximus from the Bay of Seine fishery area (France) in laboratory and in field conditions. Experimental investigations with the radiotracer ^110mAg showed that the scallop readily concentrated Ag when exposed via seawater and to a much lower extent when exposed via sediment. Retention of the metal incorporated via all tested contamination pathways was shown to be very strong, but the assimilation efficiency of Ag ingested with food was found to be tightly depending on the phytoplankton strain used to feed the scallops (74 and 33% with Skeletonema costatum and Isochrysis galbana, respectively). The uptake and depuration kinetic parameters determined in the laboratory experiments were used to run a global bioaccumulation model. The latter indicated that the major uptake pathway of Ag in P. maximus was strongly depending on the food quality. Indeed, when fed the diatom S. costatum which was characterised by a high affinity for Ag (high distribution constant K_df) the relative contribution of the feeding pathway reached 98% of the global Ag bioaccumulation. In contrast, when fed I. galbana which displayed a lower K_df than S. costatum, dietary Ag was retained to a lesser extent by P. maximus, and seawater appeared as the major contributing uptake pathway. In wild scallops collected from reference and contaminated sites, Ag was mainly concentrated in the digestive gland and secondarily in the gills, and was mainly found associated with the insoluble subcellular fraction in all the scallop tissues.     

First description of the neuro‐anatomy of a larval coral reef fish Amphiprion ocellaris

The present study described the neuro‐anatomy of a larval coral reef fish Amphiprion ocellaris and hypothesized that morphological changes during the transition from the oceanic environment to a reef environment (i.e. recruitment) have the potential to be driven by changes to environmental conditions and associated changes to cognitive requirements. Quantitative comparisons were made of the relative development of three specific brain areas (telencephalon, mesencephalon and cerebellum) between 6 days post‐hatch (dph) larvae (oceanic phase) and 11 dph (at reef recruitment). The results showed that 6 dph larvae had at least two larger structures (telencephalon and mesencephalon) than 11 dph larvae, while the size of cerebellum remained identical. These results suggest that the structure and organization of the brain may reflect the cognitive demands at every stage of development. This study initiates analysis of the relationship between behavioural ecology and neuroscience in coral reef fishes.     

Ocean acidification effects on calcification and dissolution in tropical reef macroalgae

Net calcification rates for coral reef and other calcifiers have been shown to decline as ocean acidification (OA) occurs. However, the role of calcium carbonate dissolution in lowering net calcification rates is unclear. The objective of this study was to distinguish OA effects on calcification and dissolution rates in dominant calcifying macroalgae of the Florida Reef Tract, including two rhodophytes (Neogoniolithon strictum, Jania adhaerens) and two chlorophytes (Halimeda scabra, Udotea luna). Two experiments were conducted: (1) to assess the difference in gross (⁴⁵Ca uptake) versus net (total alkalinity anomaly) calcification rates in the light/dark and (2) to determine dark dissolution (⁴⁵CaCO₃), using pH levels predicted for the year 2100 and ambient pH. At low pH in the light, all species maintained gross calcification rates and most sustained net calcification rates relative to controls. Net calcification rates in the dark were ~84% lower than in the light. In contrast to the light, all species had lower net calcification rates in the dark at low pH with chlorophytes exhibiting net dissolution. These data are supported by the relationship (R² = 0.82) between increasing total alkalinity and loss of ⁴⁵Ca from pre-labelled ⁴⁵CaCO₃ thalli at low pH in the dark. Dark dissolution of ⁴⁵CaCO₃-labelled thalli was ~18% higher in chlorophytes than rhodophytes at ambient pH, and ~ twofold higher at low pH. Only Udotea, which exhibited dissolution in the light, also had lower daily calcification rates integrated over 24 h. Thus, if tropical macroalgae can maintain high calcification rates in the light, lower net calcification rates in the dark from dissolution may not compromise daily calcification rates. However, if organismal dissolution in the dark is additive to sedimentary carbonate losses, reef dissolution may be amplified under OA and contribute to erosion of the Florida Reef Tract and other reefs that exhibit net dissolution.

     

The brown alga Lobophora variegata, a bioindicator species for surveying metal contamination in tropical marine environments

Uptake and depuration kinetics of Cd, Co, Cr, Mn, Ni and Zn were determined in the brown alga Lobophora variegata exposed to realistic concentrations of these metals, using highly sensitive radiotracer techniques. The experiments were designed to assess the possible influence of varying dissolved metal concentrations on the capacity of metal bioconcentration and retention in the alga. Results indicate that the alga takes up Cd, Co, Cr, Ni, and Zn in direct proportion to their ambient dissolved concentrations over the entire range of concentrations tested (three orders of magnitude). In contrast, Mn was taken up in proportion to its dissolved concentration only over a concentration range of 2 orders of magnitude (up to 250 ng Mn L^− 1, i.e. 4.55 nM), then at higher concentrations its accumulation efficiency slightly decreased. Overall, L. variegata appears to be a reliable bioindicator species that shows a rapid response time in metal uptake (uptake rate constants ranging from 60 to 1,023 d^− 1) and has a suitable potential to furnish valuable information on the bioavailable contamination levels occurring in New Caledonian areas affected by land-based mining activities. Furthermore, due to its wide geographical distribution, L. variegata could be considered as a useful bioindicator species for surveying metal contamination in many other tropical areas.     

The crystal structure of Rv0793, a hypothetical monooxygenase from <Emphasis Type="BoldItalic">M.␣tuberculosis</Emphasis>

Mycobacterium tuberculosis infects millions worldwide. The Structural Genomics Consortium for M. tuberculosis has targeted all genes from this bacterium in hopes of discovering and developing new therapeutic agents. Open reading frame Rv0793 from M. tuberculosis was annotated with an unknown function. The 3-dimensional structure of Rv0793 has been solved to 1.6 A resolution. Its structure is very similar to that of Streptomyces coelicolor ActVA-Orf6, a monooxygenase that participates in tailoring of polyketide antibiotics in the absence of a cofactor. It is also similar to the recently solved structure of YgiN, a quinol monooxygenase from Escherichia coli. In addition, the structure of Rv0793 is similar to several structures of other proteins with unknown function. These latter structures have been determined recently as a result of structural genomic projects for various bacterial species. In M. tuberculosis, Rv0793 and its homologs may represent a class of monooygenases acting as reactive oxygen species scavengers that are essential for evading host defenses. Since the most prevalent mode of attack by the host defense on M. tuberculosis is by reactive oxygen species and reactive nitrogen species, Rv0793 may provide a novel target to combat infection by M. tuberculosis.     

Interspecific comparison of Cd bioaccumulation in European Pectinidae (Chlamys varia and Pecten maximus)

The uptake and loss kinetics of Cd were determined in two species of scallops from the European coasts, the variegated scallop Chlamys varia and the king scallop Pecten maximus, following exposures via seawater, phytoplankton and sediment using highly sensitive radiotracer techniques (¹⁰⁹Cd). Results indicate that, for seawater and dietary pathways, C. varia displays higher bioaccumulation capacities in terms of uptake rate from water and fraction absorbed from ingested food (assimilation efficiency) than Pecten maximus. Regarding sediment exposure, P. maximus displayed low steady-state Cd transfer factor (TF_SS < 1); however, once incorporated, a very large part of Cd transferred from sediment (92%) was strongly retained within P. maximus tissues.Both species showed a high retention capacity for Cd (biological half-life, T_b1/2 > 4 months), suggesting efficient mechanisms of detoxification and storage in both species. The digestive gland was found to be the main storage organ of Cd in the two scallops regardless of the exposure pathway. However, Cd was stored differently within this organ according to the species considered: 40% of the total Cd was found in the soluble cellular fraction in C. varia whereas this soluble fraction reached 80% for P. maximus. This suggests that the two species displayed different Cd detoxification/storage mechanisms.Finally, the present study has determined the relative contribution of the different exposure pathways to global Cd bioaccumulation for the two scallop species. Results clearly show that for both species, food constitutes the major accumulation pathway, contributing for > 99% and 84% of the global Cd bioaccumulation in C. varia and P. maximus, respectively. This work confirms the previous assumption, derived from a bibliographic overview, that dietary pathway plays a prevalent role in metal bioaccumulation in Pectinidae.