A meta-analysis of seaweed impacts on seagrasses: generalities and knowledge gaps

Seagrasses are important habitat-formers and ecosystem engineers that are under threat from bloom-forming seaweeds. These seaweeds have been suggested to outcompete the seagrasses, particularly when facilitated by eutrophication, causing regime shifts where green meadows and clear waters are replaced with unstable sediments, turbid waters, hypoxia, and poor habitat conditions for fishes and invertebrates. Understanding the situations under which seaweeds impact seagrasses on local patch scales can help proactive management and prevent losses at greater scales. Here, we provide a quantitative review of available published manipulative experiments (all conducted at the patch-scale), to test which attributes of seaweeds and seagrasses (e.g., their abundances, sizes, morphology, taxonomy, attachment type, or origin) influence impacts. Weighted and unweighted meta-analyses (Hedges d metric) of 59 experiments showed generally high variability in attribute-impact relationships. Our main significant findings were that (a) abundant seaweeds had stronger negative impacts on seagrasses than sparse seaweeds, (b) unattached and epiphytic seaweeds had stronger impacts than 'rooted' seaweeds, and (c) small seagrass species were more susceptible than larger species. Findings (a) and (c) were rather intuitive. It was more surprising that 'rooted' seaweeds had comparatively small impacts, particularly given that this category included the infamous invasive Caulerpa species. This result may reflect that seaweed biomass and/or shading and metabolic by-products like anoxia and sulphides could be lower for rooted seaweeds. In conclusion, our results represent simple and robust first-order generalities about seaweed impacts on seagrasses. This review also documented a limited number of primary studies. We therefore identified major knowledge gaps that need to be addressed before general predictive models on seaweed-seagrass interactions can be build, in order to effectively protect seagrass habitats from detrimental competition from seaweeds.     

Affordable biocomputing for everyone: using the Internet,freeware and open-source software

How to build your own complete working biocomputing platform with nothing more than a desktop computer and an Internet connection.     

Satellite tracking of ringed seals Phoca hispida off northwest Greenland

We monitored movements and haul-out patterns of four ringed seals Phoca hispida , off Northwest Greenland between 5 June and 31 October 1988 using the Argos Data Collection and Location System When the seals were hauled out on fast ice their locations were accurately determined, but when they were at sea, few accurate locations were obtained, evidently because these seals spent little time at the surface between dives The seals remained within the fjord where they were tagged, and hauled out often to early July Thereafter, as fast-ice disappeared, they dispersed widely and spent less time hauled out Time of day had no significant effect on haul-out patterns Haul-out periods declined significantly from June to August and increased in September-October Satellite contact with one seal was lost after 16 d while the seal was still in the fjord in late June One seal travelled over 200 km southwest and was located 4 July in offshore waters of Smith Sound 30 d after instrumentation Another seal moved southeast along the Greenland coast where contact was lost after 49 d on 23 July The fourth seal moved north along the Greenland coast, hauled out regularly on ice, and returned south along the coast in late September and October after 181 d of contact with the satellite     

Screening for antimicrobial resistance genes and virulence factors via genome sequencing

Second-generation genome sequencing and alignment of the resulting reads to in silico genomes containing antimicrobial resistance and virulence factor genes were used to screen for undesirable genes in 28 strains which could be used in human nutrition. No virulence factor genes were detected, while several isolates contained antimicrobial resistance genes.     

Differences in food abundance cause inter-annual variation in the breeding phenology of High Arctic waders

Previous work has shown that High Arctic waders in Greenland are “income breeders”, i.e. the resources used for egg formation are based almost entirely on biomass obtained on the breeding grounds. Thus, their breeding phenology is expected to be highly sensitive to inter-annual variation in food abundance during the pre-laying period. Early spring snow-cover may also influence timing of egg-laying either directly or mediated through food resources. Here, we report on the inter-annual variation in clutch initiation of three wader species breeding in High Arctic Greenland, Sanderling (Calidris alba), Dunlin (Calidris alpina) and Ruddy Turnstone (Arenaria interpres), in relation to spring snow-cover and spring arthropod abundance over ten breeding seasons at Zackenberg Research Station 1995–2005. Food abundance had the strongest effect on timing of clutch initiation, while the proportion of snow-free land had a weaker but still significant effect, i.e. more food and more snow-free land both result in earlier egg-laying. We hypothesize that food is most important when there is sufficient snow-free land to nest on, while snow-cover is of increasing importance in years with late snowmelt.     

Endocytic down-regulation of ErbB2 is stimulated by cleavage of its C-terminus

High ErbB2 levels are associated with cancer, and impaired endocytosis of ErbB2 could contribute to its overexpression. Therefore, knowledge about the mechanisms underlying endocytic down-regulation of ErbB2 is warranted. The C-terminus of ErbB2 can be cleaved after various stimuli, and after inhibition of HSP90 with geldanamycin this cleavage is accompanied by proteasome-dependent endocytosis of ErbB2. However, it is unknown whether C-terminal cleavage is linked to endocytosis. To study ErbB2 cleavage and endocytic trafficking, we fused yellow fluorescent protein (YFP) and cyan fluorescent protein (CFP) to the N- and C-terminus of ErbB2, respectively (YFP-ErbB2-CFP). After geldanamycin stimulation YFP-ErbB2-CFP became cleaved in nonapoptotic cells in a proteasome-dependent manner, and a markedly larger relative amount of cleaved YFP-ErbB2-CFP was observed in early endosomes than in the plasma membrane. Furthermore, cleavage took place at the plasma membrane, and cleaved ErbB2 was internalized and degraded far more efficiently than full-length ErbB2. Concordantly, a C-terminally truncated ErbB2 was also readily endocytosed and degraded in lysosomes compared with full-length ErbB2. Altogether, we suggest that geldanamycin leads to C-terminal cleavage of ErbB2, which releases the receptor from a retention mechanism and causes endocytosis and lysosomal degradation of ErbB2.