The phytoplankton of S'Ena Arrubia Lagoon (Centre-Western Sardinia) between 1990 and 1995

Abstract

The phytoplankton study on the S'Ena Arrubia Lagoon started in 1990, after dystrophic events, leading to high fish mortality and consequently great economic losses. This study presents a general picture of the conditions of the lagoon between 1990 and 1995, and reports on the quali-quantitative changes in the phytoplanktonic populations, as well as the trends of temperature, salinity, pH, dissolved oxygen, algal nutrients and chlorophyll a. The lagoon was characterized by great changes in salinity between years and within the same year, by high nutrient contents and by a phytoplankton trend characterized by sudden intense blooms mostly due to the Chlorophyceae and the Bacillariophyceae. The number of species found, decreased from 1990 to 1994, followed by a slight increase in 1995. The same trend was also found for total density and chlorophyll a.     

Sand pile above the nest amplifies the sound emitted by the male sand goby

The male sand gobies calls and spawns inside cavities beneath stones, shells and other submerged objects (including artificial shelters) which he covers by piling sand on them. A previous study showed fish shelters likely act as impedance-matching devices enhancing sound frequencies below 500 Hz. This study examines the effect of the sand pile on sound amplification by shelters commonly used by Mediterranean sand gobies as nest sites in the field (bivalve shells, pebbles), or within aquarium tanks (tunnel-shaped plastic tiles, halves of clay flower-pots). Shelters were acoustically stimulated with white noise and artificial pulse-trains emitted by a small underwater buzzer placed inside the cavity. Results showed the sand pile increased the low-frequency gain by up to 12 dB. Conclusions were verified by examining the role of natural sand builds in sound amplification using data from a previous laboratory study on sound production in the male sand goby P. minutus. Implications for acoustic communication in sand gobies are discussed.     

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

Assessing the distribution of 16S rRNA gene sequences within a biological sample represents the current state-of-the-art for determination of human gut microbiota composition. Advances in dissecting the microbial biodiversity of this ecosystem have very much been dependent on the development of novel high-throughput DNA sequencing technologies, like the Ion Torrent. However, the precise representation of this bacterial community may be affected by the protocols used for DNA extraction as well as by the PCR primers employed in the amplification reaction. Here, we describe an optimized protocol for 16S rRNA gene-based profiling of the fecal microbiota.     

Cell surface protease PRT1 identified in the fungal pathogen Pneumocystis carinii

The subtelomeric regions of the chromosomes of many organisms contain gene families that allow adaptation to a changing environment. In a number of parasites, these subtelomeric gene families encode cell surface proteins that undergo antigenic variation. Proteases are another important virulence determinant in pathogenic microorganisms. We report the localization of the PRT1 protease of the pathogenic fungus Pneumocystis carinii sp. f. carinii, encoded by a subtelomeric gene family, to the cell surface of both the trophozoite and the cyst phase of the organism. Using anti-PRT1 antiserum, we demonstrated specificity to P. carinii sp. f. carinii in sections of infected rat lungs and, using immunofluorescence, we showed that the PRT1 protease has the characteristic distribution of a surface protein. The anti-PRT1 antiserum showed cross-reactivity with a number of P. carinii sp. f. carinii proteins migrating between 185 kDa and 28 kDa, the majority migrating between 42 kDa and 52 kDa, a region that has been shown by serological studies to contain important immunodominant P. carinii proteins. Cross-reactivity was also observed with P. carinii sp. f. hominis proteins. We have also cloned a portion of the catalytic domain of PRT1 from P. carinii sp. f. hominis, P. carinii sp. f. muris and P. carinii sp. f. rattus. Our data suggest that the PRT1 protease plays an important role in the pathogenicity of P. carinii.     

Genetic polymorphisms of Fas (CD95) and Fas ligand (CD178) influence the rise in CD4+ T cell count after antiretroviral therapy in drug-naïve HIV-positive patients

Fas and Fas ligand (FasL) are the main genes that control cell death in the immune system. Indeed, they are crucial for the regulation of T lymphocyte homeostasis because they can influence cell proliferation. A strong debate exists on the importance of Fas/FasL system during HIV infection, which is characterized by the loss of CD4+ T cells directly, or indirectly, caused by the virus. To investigate whether the genetic background of the host plays a role in the immunoreconstitution, we studied the influence of different Fas and FasL polymorphisms on CD4+ T lymphocyte count and plasma viral load following initiation of highly active antiretroviral therapy (HAART) in drug-naïve HIV+ patients. We studied 131 individuals, who were compared to 136 healthy donors. Statistical analysis was performed by using X ² test, Fischer's Exact Test, and analysis for repeated measurements. The group of HIV+ patients had an unexpected lower frequency of FasLnt169 polymorphism (delT allele) than healthy controls (p=0.039). We then observed no significant differences in the immune reconstitution, in terms of CD4+ T cell increase, when the influence of single alleles of the gene Fas or FasL was considered. However, the combination of some polymorphisms of Fas or FasL significantly influenced CD4+ T cell production and viral load decrease, showing that these genes can play a role in the immunoreconstitution triggered by antiretroviral therapy.     

A soil-plant model applied to phytoremediation of metals

This study reports a phytoremediation pot experiment using an open-source program. Unsaturated water flow was described by the Richards' equation and solute transport by the advection-dispersion equation. Sink terms in the governing flow and transport equations accounted for root water and solute uptake, respectively. Experimental data were related to application of Vetiver grass to soil contaminated by metal ions. Sensitivity analysis revealed that due to the specific experimental set-up (bottom flux not allowed), hydraulic model parameters did not influence root water (and contaminant) uptake. In contrast, the results were highly correlated with plant solar radiation interception efficiency (leaf area index). The amounts of metals accumulated in the plant tissue were compared to numerical values of cumulative uptake. Pb²⁺ and Zn²⁺ uptake was satisfactorily described using a passive model. However, for Ni²⁺ and Cd²⁺, a specific calibration of the active uptake model was necessary. Calibrated MM parameters for Ni²⁺, Cd²⁺, and Pb²⁺ were compared to values in the literature, generally suggesting lower rates and saturation advance. A parameter (saturation ratio) was introduced to assess the efficiency of contaminant uptake. Numerical analysis, applying actual field conditions, showed the limitation of the active model for being independent of the transpiration rate.