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1.
MARIA JOSÉ ASINS IRENE VILLALTA MOHAMED M. ALY RAQUEL OLÍAS PAZ ÁLVAREZ DE MORALES RAÚL HUERTAS JUN LI NOELIA JAIME‐PÉREZ ROSARIO HARO VERÓNICA RAGA EMILIO A. CARBONELL ANDRÉS BELVER 《Plant, cell & environment》2013,36(6):1171-1191
The location of major quantitative trait loci (QTL) contributing to stem and leaf [Na+] and [K+] was previously reported in chromosome 7 using two connected populations of recombinant inbred lines (RILs) of tomato. HKT1;1 and HKT1;2, two tomato Na+‐selective class I‐HKT transporters, were found to be closely linked, where the maximum logarithm of odds (LOD) score for these QTLs located. When a chromosome 7 linkage map based on 278 single‐nucleotide polymorphisms (SNPs) was used, the maximum LOD score position was only 35 kb from HKT1;1 and HKT1;2. Their expression patterns and phenotypic effects were further investigated in two near‐isogenic lines (NILs): 157‐14 (double homozygote for the cheesmaniae alleles) and 157‐17 (double homozygote for the lycopersicum alleles). The expression pattern for the HKT1;1 and HKT1;2 alleles was complex, possibly because of differences in their promoter sequences. High salinity had very little effect on root dry and fresh weight and consequently on the plant dry weight of NIL 157‐14 in comparison with 157‐17. A significant difference between NILs was also found for [K+] and the [Na+]/[K+] ratio in leaf and stem but not for [Na+] arising a disagreement with the corresponding RIL population. Their association with leaf [Na+] and salt tolerance in tomato is also discussed. 相似文献
2.
Vasilyeva A. D. Ivanov V. S. Yurina L. V. Indeykina M. I. Bugrova A. E. Kononikhin A. S. Nikolaev E. N. Rosenfeld M. A. 《Doklady. Biochemistry and biophysics》2021,501(1):419-423
Doklady Biochemistry and Biophysics - Plasminogen is a zymogenic form of plasmin, an enzyme that plays a fundamental role in the dissolution of fibrin clots as well as in many other physiological... 相似文献
3.
A. S. Kononikhin V. V. Chagovets N. L. Starodubtseva A. Y. Ryndin A. E. Bugrova Y. I. Kostyukevich I. A. Popov V. E. Frankevich O. V. Ionov G. T. Sukhikh E. N. Nikolaev 《Molecular Biology》2016,50(3):470-473
Here, the possibility of proteomic and metabolomic analysis of the composition of exhaled breath condensate of neonates with respiratory support. The developed method allows non-invasive collecting sufficient amount of the material for identification of disease-specific biomarkers. Samples were collected by using a condensing device that was incorporated into the ventilation system. The collected condensate was analyzed by liquid chromatography coupled with high resolution mass spectrometry and tandem mass spectrometry. The isolated substances were identified with a use of databases for proteins and metabolites. As a result, a number of compounds that compose the exhaled breath condensate was determined and can be considered as possible biomarkers of newborn diseases or stage of development. 相似文献
4.
Konstantin Chingin Yunfeng Cai Vitaliy Chagovets Alexey Kononikhin Natalia Starodubtseva Vladimir Frankevich Huanwen Chen 《Metabolomics : Official journal of the Metabolomic Society》2016,12(11):171
Introduction
The chemical sensitivity of urine metabolomics analysis is greatly compromised due to the large amounts of inorganic salts in urine (NaCl, KCl), which are detrimental to analytical instrumentation, e.g. chromatographic columns or mass spectrometers. Traditional desalting approaches applied to urine pretreatment suffer from the chemical losses, which reduce the information depth of analysis.Objectives
We aimed to test a simple approach for the simultaneous preconcentration and desalting of organic solutes in urine based on the collection of induced bursting bubble aerosols above the surface of urine samples.Method
Bursting bubbles were generated at ambient conditions by feeding gas through an air diffuser at the bottom of diluted (200 times in ultrapure water) urine solution (50–500 mL). Collected aerosols were analyzed by the direct-infusion electrospray ionization mass spectrometry (ESI–MS).Results
The simultaneous preconcentration (ca. 6–12 fold) and desalting (ca. six–tenfold) of organic solutes in urine was achieved by the bursting bubble sample pretreatment, which allowed ca. three-times higher number of identified urine metabolites by high-resolution MS analysis. No chemical losses due to bubbling were observed. The increased degree of MS data clustering was demonstrated on the principal component analysis of data sets from the urine of healthy people and from the urine people with renal insufficiency. At least ten times higher sensitivity of trace drug detection in urine was demonstrated for clenbuterol and salbutamol.Conclusion
Our results indicate the high versatility of bubble bursting as a simple pretreatment approach to enhance the chemical depth and sensitivity of urine analysis. The approach could be attractive for personalized medicine as well as for the diagnostics of renal disorders of different etiology (diabetic nephropathy, chronic renal failure, transplant-associated complications, oncological disorders).Graphical Abstract
Urine desalting and preconcentration in bursting bubbles.
5.
Oral pathogens have created a menace in recent years due to biofilm formation and antimicrobial drug resistance. The current treatment strategy works well with antibiotics. However, constant use of antibiotics creates a selective pressure, which increases adaptability of the pathogens. Therefore, it is of interest to analyze the potential targets of genistein in dental pathogens using computer aided prediction tools. 相似文献
6.
Background
Annotation of sequences that share little similarity to sequences of known function remains a major obstacle in genome annotation. Some of the best methods of detecting remote relationships between protein sequences are based on matching sequence profiles. We analyse the superfamily specific performance of sequence profile-profile matching. Our benchmark consists of a set of 16 protein superfamilies that are highly diverse at the sequence level. We relate the performance to the number of sequences in the profiles, the profile diversity and the extent of structural conservation in the superfamily. 相似文献7.
Background
Existing cut-offs for fasting plasma glucose (FPG) and post-load glucose (2hPG) criteria are not equivalent in the diagnosis of diabetes and glucose intolerance. Adjusting cut-offs of single measurements have not helped so we undertook this project to see if they could be complementary. 相似文献8.
Ahmed S Abdel-Moneim Ahmad E Abdel-Ghany Salama AS Shany 《Journal of biomedical science》2010,17(1):25
Background
The highly pathogenic H5N1 is a major avian pathogen that crosses species barriers and seriously affects humans as well as some mammals. It mutates in an intensified manner and is considered a potential candidate for the possible next pandemic with all the catastrophic consequences. 相似文献9.
I.?A.?Agron D.?M.?Avtonomov A.?S.?Kononikhin I.?A.?Popov S.?A.?Moshkovskii E.?N.?NikolaevEmail author 《Biochemistry. Biokhimii?a》2010,75(5):636-641
Information about peptides and proteins in urine can be used to search for biomarkers of early stages of various diseases.
The main technology currently used for identification of peptides and proteins is tandem mass spectrometry, in which peptides
are identified by mass spectra of their fragmentation products. However, the presence of the fragmentation stage decreases
sensitivity of analysis and increases its duration. We have developed a method for identification of human urinary proteins
and peptides. This method based on the accurate mass and time tag (AMT) method does not use tandem mass spectrometry. The
database of AMT tags containing more than 1381 AMT tags of peptides has been constructed. The software for database filling
with AMT tags, normalizing the chromatograms, database application for identification of proteins and peptides, and their
quantitative estimation has been developed. The new procedures for peptide identification by tandem mass spectra and the AMT
tag database are proposed. The paper also lists novel proteins that have been identified in human urine for the first time. 相似文献
10.
Jessica AB van Nies Rute B Marques Stella Trompet Zuzana de Jong Fina AS Kurreeman Rene EM Toes J Wouter Jukema Tom WJ Huizinga Annette HM van der Helm-van Mil 《Arthritis research & therapy》2010,12(2):R38