Biotic and abiotic factors associated with citrus progressive decline in Fars Province,Iran

Citrus decline has become a devastating problem in citrus-growing regions of southern Iran. The affected trees show progressive yellowing of leaves, thinning of the canopy, dieback and total collapse. Despite a number of attempts, the aetiology of the decline has remained uncertain. In the present study, we evaluated the potential association of various biotic and abiotic factors with the decline in the Fars Province of Iran. Biotic agents surveyed included Candidatus Liberibacter asiaticus, Spiroplasma citri, phytoplasmas, Tylenchulus semipenetrans and root infecting fungi and oomycetes. Abiotic factors studied were soil and water salinity, changes in prevailing temperature and other environmental conditions. In our surveys, Ca. L. asiaticus, either alone or in combination with other factors, had the highest frequency of association (92%) with the decline, followed by S. citri (75%). Ca. L. asiaticus was not detected in any of the non-decline trees examined. Pythium or Phytophthora species and a fungus of theFusarium solani species complex were also isolated from roots of many declining trees. Phytoplasmas were found only in few cases, and populations of citrus nematode were often below the threshold of economic loss. Soil/water salinity were in the suitable range for citrus cultivation in most cases. It is suggested that the decline is initiated by Ca. L. asiaticus infection, which is known to weaken the root system and make it vulnerable to infection by opportunistic soil fungi and oomycetes. S. citri, summer temperatures, low air humidity and overbearing of the trees seem to be other potential factors contributing to the intensity of the disease.     

Hydrodynamics and mass transfer in miniaturized bubble column bioreactors

Miniaturized bubble columns (MBCs) have different hydrodynamics in comparison with the larger ones, but there is a lack of scientific data on MBCs. Hence, in this study, the effect of gas hold-up, flow regimes, bubble size distribution on volumetric oxygen mass transfer coefficient at different pore size spargers and gas flow rates in MBCs in the presence and absence of microorganisms were investigated. It was found that flow regime transition occurred around low gas flow rates of 1.18 and 0.85 cm/s for small (16–40 µm) and large (40–100 µm) pore size spargers, respectively. Gas hold-up and K_La in MBC with small size sparger were higher than those with larger one, with an increasing effect in the presence of microorganisms. A comparison revealed that the wall effect on the flow regime and gas hold-up in MBCs was greater than bench-scale bubble columns. The K_La values significantly increased up to tenfold using small pore size sparger. In the MBC and stirred tank bioreactors, the maximum obtained cell concentrations were OD₆₀₀ of 41.5 and 43.0, respectively. Furthermore, it was shown that in MBCs, higher K_La and lower turbulency could be achieved at the end of bubbly flow regime.

     

Spiralin Diversity Within Iranian Strains of Spiroplasma citri

The first-cultured and most-studied spiroplasma is Spiroplasma citri, the causal agent of citrus stubborn disease, one of the three plant-pathogenic, sieve-tube-restricted, and leafhopper vector-transmitted mollicutes. In Iranian Fars province, S. citri cultures were obtained from stubborn affected citrus trees, sesame and safflower plants, and from the leafhopper vector Circulifer haematoceps. Spiralin gene sequences from different S. citri isolates were amplified by PCR, cloned, and sequenced. Phylogenetic trees based on spiralin gene sequence showed diversity and indicated the presence of three clusters among the S. citri strains. Comparison of the amino acid sequences of eleven spiralins from Iranian strains and those from the reference S. citri strain GII-3 (241 aa), Palmyre strain (242 aa), Spiroplasma kunkelii (240 aa), and Spiroplasma phoeniceum (237 aa) confirmed the conservation of general features of the protein. However, the spiralin of an S. citri isolate named Shiraz I comprised 346 amino acids and showed a large duplication of the region comprised between two short repeats previously identified in S. citri spiralins. We report in this paper the spiralin diversity in Spiroplasma strains from southern Iran and for the first time a partial internal duplication of the spiralin gene.