Confirmation of operative acetate, H2/CO2 and methanol methanogenic pathways in the solid-state refuse fermentation

By use of the radiolabelled substrates sodium [1–¹⁴C] acetate, sodium [2–¹⁴C] acetate, NaH¹⁴CO₃ and ¹⁴CH₃OH, three of the possible methanogenic pathways in fermenting refuse were confirmed. Due to the absence of a methanol pool, however, the relative contribution of each could not be determined. Circumstantial evidence for an operative trimethylamine pathway was gained but not confirmed whilst preliminary attempts to stimulate methanogenesis in refuse by supplementation with mono-and dimethylamine proved unsuccessful.     

Effect of nutrition and endoparasitic treatment on growth, onset of puberty and reproductive activity in Menz ewe lambs

Ewe lambs of the Ethiopian Menz breed were assigned at weaning (90+/-3 days) to four levels of nutrition (poor, low, medium and high) to achieve different premating growth rates with or without treatment for endoparasites. A concentrate mixture providing 2.5 Mcal/kg dry matter (DM) metabolizable energy and 15.2 g/kg DM digestible protein was used. Improved nutrition increased lamb postweaning average daily weight gain up to puberty by 6 to 26 g/day and the conception rate to first estrus by 9 to 16% while it reduced the mortality rate by 24 to 31% and age at first lambing by 2 to 5 months. Lambs reached puberty (age at first estrus) at 16.9+/-0.1 kg (+/-SEM) or 60% of mature body weight and 350+/-12 days of age. The onset of puberty was advanced by weaning weight (P<0.05), itself being well correlated with birth weight (r = 0.51, P<0.001), and by level of nutrition (high=299+/-19, medium=301+/-18, low=383+/-23 and poor=454+/-31 days, P<0.001) through enhanced growth rate (r = -0.82, P<0.001). No independent effect of drenching for endoparasites on pubertal development was observed (P>0.05), but its interaction with season-of-birth improved the growth of lambs born during the period of short rains (P<0.05). Overall mean litter size at first lambing was 1.07; the twinning rate was 6.5% and the birth weight was 1.9+/-0.1 kg. Up to 13.4% of newborn lambs, averaging 1.3+/-0.6 kg, died on the day of parturition. The results indicate that improved growth rate and body weight, resulting from better postweaning nutrition, affects the attainment of puberty in Menz ewe lambs. Mitigation of nutrition stress and endoparasitic infection depending on season-of-birth would thus increase the annual reproductive rate of breeding ewes and flock productivity.     

The TGF-β inhibitory activity of antibody 37E1B5 depends on its H-CDR2 glycan

Excessive transforming growth factor (TGF)-β is associated with pro-fibrotic responses in lung disease, yet it also plays essential roles in tissue homeostasis and autoimmunity. Therefore, selective inhibition of excessive and aberrant integrin-mediated TGF-β activation via targeting the α-v family of integrins is being pursued as a therapeutic strategy for chronic lung diseases, to mitigate any potential safety concerns with global TGF-β inhibition. In this work, we reveal a novel mechanism of inhibiting TGF-β activation utilized by an αvβ8 targeting antibody, 37E1B5. This antibody blocks TGF-β activation while not inhibiting cell adhesion. We show that an N-linked complex-type Fab glycan in H-CDR2 of 37E1B5 is directly involved in the inhibition of latent TGF-β activation. Removal of the Fab N-glycosylation site by single amino acid substitution, or removal of N-linked glycans by enzymatic digestion, drastically reduced the antibody's ability to inhibit latency-associated peptide (LAP) and αvβ8 association, and TGF-β activation in an αvβ8-mediated TGF-β signaling reporter assay. Our results indicate a non-competitive, allosteric inhibition of 37E1B5 on αvβ8-mediated TGF-β activation. This unique, H-CDR2 glycan-mediated mechanism may account for the potent but tolerable TGF-b activation inhibition and lack of an effect on cellular adhesion by the antibody.     

The approximate entropy of the electromyographic signals of tremor correlates with the osmotic fragility of human erythrocytes

Background  

The main problem of tremor is the damage caused to the quality of the life of patients, especially those at more advanced ages. There is not a consensus yet about the origins of this disorder, but it can be examined in the correlations between the biological signs of aging and the tremor characteristics.     

epi-Cubebanes from Solidago canadensis

GC-MS of the essential oil prepared by hydrodistillation of the green parts of a specimen of Solidago canadensis collected near Katowice, Poland, revealed two new sesquiterpene hydrocarbons. Their EI mass spectra resembled the mass spectrum of beta-ylangene (1) but the retention indices of the new compounds differed markedly from this known compound. After isolation of the new compounds by preparative GC their investigation by one- and two-dimensional NMR techniques resulted in the identification of 6-epi-alpha-cubebene (2) (minor constituent, 1.5%) and 6-epi-beta-cubebene (3) (major constituent, 20.5%).     

Solid-state refuse methanogenic fermentation: control and promotion by water addition

The efficacy of single water additions to promote the solid-state refuse methanogenic fermentation was examined with laboratory batch cultures. Initially, acidogenesis increased with increasing water addition although product inhibition was also apparent, particularly in low moisture content samples. With refuse columns, a moisture content increase from 55 to 75% (w/w) effected a 2.4-fold increase in the total volume of methane evolved during a 95-day incubation period although reduced evolution was apparent at the elevated moisture content of 80% (w/w). In general, the methane content of the evolved gases increased in response to increased water addition.     

Heat-shock responsive genes identified and validated in Atlantic cod (Gadus morhua) liver, head kidney and skeletal muscle using genomic techniques

Background

The Mongolian gerbils are a good model to mimic the Helicobacter pylori -associated pathogenesis of the human stomach. In the current study the gerbil-adapted strain B8 was completely sequenced, annotated and compared to previous genomes, including the 73 supercontigs of the parental strain B128.

Results

The complete genome of H. pylori B8 was manually curated gene by gene, to assign as much function as possible. It consists of a circular chromosome of 1,673,997 bp and of a small plasmid of 6,032 bp carrying nine putative genes. The chromosome contains 1,711 coding sequences, 293 of which are strain-specific, coding mainly for hypothetical proteins, and a large plasticity zone containing a putative type-IV-secretion system and coding sequences with unknown function. The cag -pathogenicity island is rearranged such that the cag A-gene is located 13,730 bp downstream of the inverted gene cluster cag B- cag 1. Directly adjacent to the cag A-gene, there are four hypothetical genes and one variable gene with a different codon usage compared to the rest of the H. pylori B8-genome. This indicates that these coding sequences might be acquired via horizontal gene transfer. The genome comparison of strain B8 to its parental strain B128 delivers 425 unique B8-proteins. Due to the fact that strain B128 was not fully sequenced and only automatically annotated, only 12 of these proteins are definitive singletons that might have been acquired during the gerbil-adaptation process of strain B128.

Conclusion

Our sequence data and its analysis provide new insight into the high genetic diversity of H. pylori -strains. We have shown that the gerbil-adapted strain B8 has the potential to build, possibly by a high rate of mutation and recombination, a dynamic pool of genetic variants (e.g. fragmented genes and repetitive regions) required for the adaptation-processes. We hypothesize that these variants are essential for the colonization and persistence of strain B8 in the gerbil stomach during inflammation.     

Preliminary investigation of the influence of pH on the solid-state refuse methanogenic fermentation

Laboratory refuse columns and bottle cultures were used to examine the responses of the interrelated metabolic processes of acid metabolism, solvent metabolism and methanogenesis of the solid-state refuse fermentation to single initial additions of exogenous buffering capacity. Refuse samples poised at neutral and alkaline pH values, by the addition of 0.2 mol/1 phosphate buffer, were found to promote acid-ogenesis to such an extent that methanogenesis was inhibited. The same inhibition was also apparent in the presence of acid pH regimes which were initially characterized by the accumulation of solvents. The possible implications of controlling pH by adding buffer to promote and exploit the refuse fermentation are discussed.     

Control/promotion of the refuse methanogenic fermentation

Although practiced for more than 7 millennia, the landfill disposal of refuse has, as yet, with few exceptions, been merely regarded as a low-cost disposal option and its exploitation potential has been largely ignored. Today, however, a number of possibilities are under consideration including the production of energy, chemical feedstock, value-added chemicals, carbon dioxide and protein; the use of refuse as an anaerobic filter for the co-disposal of industrial wastewater and sludge; and the restoration of impoverished soils by fresh or composted refuse addition. Development of these technologies, however, necessitates a comprehensive understanding of the fundamental microbiology and biochemistry of refuse catabolism. Existing fundamental knowledge underpinning these technologies will be considered in a series of review articles. In the first, control/exploitation of the solid-state refuse methanogenic fermentation is examined with specific reference to the effects of first-tier variable manipulations.