落叶松-杨栅锈菌基因复制事件及共线性分析

落叶松-杨栅锈菌是一种分布广且危害严重的林木病原真菌.了解基因组内发生的基因复制事件及基因组间的共线性关系,能为最终理解落叶松-杨栅锈菌适应性进化等生物学问题提供帮助.落叶松-杨栅锈菌全基因组水平上基因复制相关研究未见报道,共线性研究报道也较少.本研究利用落叶松-杨栅锈菌全基因组序列分析其基因复制模式.结果表明,落叶松...     

球孢白僵菌对黄瓜代谢产物及西花蓟马取食行为的影响

球孢白僵菌Beauveria bassiana灌根处理黄瓜后,发现西花蓟马Frankliniella occidentalis对叶片危害面积显著低于对照组;为探究产生这一现象的原因,测定黄瓜叶片中防御酶系和次生代谢产物等含量变化,采用直流刺吸电位仪(direct current electrical penetration graph,DC-EPG)分析西花蓟马成虫取食黄瓜叶片的行为.球孢白僵菌对黄瓜灌根后叶片中过氧化氢酶(CAT)、过氧化物酶(POD)和超氧化物歧化酶(SOD)含量均呈上升趋势,其中CAT活性增加最高,增加率为37.26％;丙二醛MDA的含量呈下降趋势;可溶性蛋白、类黄酮的含量增加.DC-EPG显示西花蓟马在经球孢白僵菌处理的黄瓜上,取食时间和次数均低于对照组.结果表明,黄瓜植株经球孢白僵菌处理后防御酶物质增加,进而导致西花蓟马对叶片危害下降,利于对西花蓟马的防治.     

Enhanced stability of a rumen-derived xylanase using SpyTag/SpyCatcher cyclization

A phosphate solubilizing bacterium ZB was isolated from the rhizosphere soil of Araucaria, which falls into the species Pantoea agglomerans. Optimization for phosphate solubilization by strain ZB was performed. At optimum culture conditions, the isolate showed great ability of solubilizing different insoluble inorganic phosphate sources viz. Ca₃(PO₄)₂ (TCP), Hydroxyapatite (HP), CaHPO₄, AlPO₄, FePO₄ along with rock phosphates (RPs). Inoculation with planktonic cells was found to enhance dissolved phosphorous as compared to that achieved by symplasma inoculation. Besides inoculation with different status of cells, pre-incubation could also exert a great effect on phosphate solubilization ability of P. agglomerans. When isolate ZB was cultured with glucose as carbon sources, phosphorous was more efficiently dissolved from HP and RP without pre-incubation in comparison to that obtained with pre-cultivation. Pre-cultivation, however, was more suitable for P solubilization than no pre-cultivation when bacteria were grown with xylose. A positive correlation was detected between the production of organic acids and phosphate solubilization. P. agglomerans ZB possessed many plant growth promotion traits such as N₂ fixation and production of indole 3-acetic acid, phytase, alkaline phosphatase. Pot experiment showed inoculation with single isolate ZB or biofertilizer prepared from semi-solid fermentation of isolate ZB with spent mushroom substrate (SMS) compost could enhance plant growth with respect to number of leaves, plant leave area, stem diameter, root length, root dry mass, shoot dry mass and biomass when compared to the abiotic control, revealing strain ZB could be a promising environmental-friendly biofertilizer to apply for agricultural field.

     

硼、锌对平欧杂交榛光合生理、结实和果仁品质的影响

通过对黑龙江省东宁地区的4年生平欧杂交榛（Corylus heterophylla×Corylus avellana）联合施用不同浓度的硼（0.2%、0.3%、0.4%）、锌（0.3%、0.4%、0.5%）肥处理,研究两种微量元素对平欧杂交榛光合生理、结实、果仁和叶片营养状态的影响。研究结果表明：（1）硼、锌对净光合速率影响显著,其交互作用对净光合速率影响极显著。（2）硼对出仁率影响极显著,对果仁重影响显著,对单果重和座果率影响不显著。锌对单果重和果仁重影响极显著,对出仁率影响显著,对座果率影响不显著。硼、锌交互作用对出仁率影响显著,对单果重、果仁重和座果率影响不显著。（3）硼、锌和其交互作用对果仁脂肪酸含量、果仁蛋白质含量影响不显著。硼、锌和其交互作用对4年生平欧杂交榛的生理和结实影响明显,提高了平欧杂交榛叶片的净光合速率,同时对果仁重、出仁率和单果重有不同程度的促进作用。本地区4年生平欧杂交榛硼、锌叶面施肥的浓度分别以0.3%和0.4%为宜。     

Assessment of tetralogy of Fallot–associated congenital extracardiac vascular anomalies in pediatric patients using low-dose dual-source computed tomography

Background

To investigate the diagnostic value of dual-source computed tomography (DSCT) in the evaluation of tetralogy of Fallot (TOF)-associated extracardiac vascular abnormalities in pediatric patients compared with transthoracic echocardiography (TTE).

Methods

One hundred and twenty-three pediatric patients diagnosed with TOF were included in this retrospective study. All patients underwent DSCT and TTE preoperatively. All associated extracardiac vascular abnormalities and their percentages were recorded. The diagnostic performances of DSCT and TTE were compared based on the surgical results. The image quality of DSCT was rated, and the effective radiation dose (ED) was calculated.

Results

A total of 159 associated extracardiac vascular deformities were confirmed by surgery. Patent ductus arteriosus (36, 22.64%), right-sided aortic arch (29, 18.24%), and pulmonary valve stenosis (23, 14.47%) were the most common associated extracardiac vascular abnormalities. DSCT was superior to TTE in demonstrating associated extracardiac anomalies (diagnostic accuracy: 99.13% vs. 97.39%; sensitivity: 92.45% vs. 77.07%; specificity: 99.81% vs. 99.42%). The agreement on grading the image quality of DSCT was excellent (κ?=?0.80), and the mean score of the image quality was 3.39?±?0.50. The mean ED of DSCT was 0.86?±?0.47 mSv.

Conclusions

Compared to TTE, low-dose DSCT has high diagnostic accuracy in the depiction of associated extracardiac vascular anomalies in pediatric patients with TOF, and could provide more morphological details for surgeons.

     

模拟氮沉降对落叶松人工林土壤呼吸的影响

在东北林业大学帽儿山实验林场26年生落叶松人工林中,连续2年(2013~2014年)施加NH_4NO_3模拟氮沉降试验((对照(CK,0 g·m~(-2)·a~(-1)N)、低氮(N1,5 g·m~(-2)·a~(-1)N)、中氮(N2,10 g·m~(-2)·a~(-1)N)、高氮(N3,15 g·m~(-2)·a~(-1)N)),研究不同氮沉降水平对土壤呼吸的影响。结果表明:(1)2013年模拟氮沉降处理均促进年平均土壤呼吸速率(P0.05);(2)2014年中氮和高氮处理抑制年平均土壤呼吸和异养呼吸速率(P0.05),低氮处理促进年均土壤呼吸速率(P0.05),对异养呼吸速率影响不显著(P0.05);(3)土壤微生物生物量碳在低氮处理下显著提高(P0.05),在中氮和高氮处理下与对照间差异不显著(P0.05);(4)土壤呼吸速率与5和10 cm土壤温度呈指数正相关关系(P0.01),相比对照,各土层土壤呼吸温度敏感系数(Q_(10))均在低氮处理下增加,在中氮和高氮处理下则降低。不同水平的模拟氮沉降改变了土壤呼吸速率及其温度敏感性,表明短期内低水平氮沉降可加快土壤碳排放过程,相对较高水平氮沉降则减缓土壤碳排放过程。     

Expanding the clinicopathological-genetic spectrum of GNE myopathy by a Chinese neuromuscular centre

GNE myopathy is a heterogeneous group of ultrarare neuromuscular disorders caused by mutations in the GNE gene. An estimated prevalence of 1~21/1,000,000 leads to a deficiency of data and a lack of availability of samples to conduct clinical research on this neuromuscular disorder. Although GNE, which is the mutated gene responsible for the disease, is well known as the key enzyme in the biosynthesis pathway of sialic acid, the clinicopathological-genetic spectrum of GNE mutant patients is still unclear and expanding. This study presents ten unrelated patients with GNE myopathy, discovering five novel missense mutations. Clinical, electrophysiological, imaging, pathological and genetic data are presented in a retrospective manner. Interestingly, several patients in the cohort were found to have peripheral neuropathy and inflammatory cell infiltration in muscle biopsies, which have seldom been reported. This study, conducted by a neuromuscular centre in China, is the first attempt to highlight these abnormal clinicopathological features and associate them with genetic mutations in GNE myopathy.     

Fine mapping of the psoriasis susceptibility locus PSORS1 supports HLA-C as the susceptibility gene in the Han Chinese population

PSORS1 (psoriasis susceptibility gene 1) is a major susceptibility locus for psoriasis. Several fine-mapping studies have highlighted a 300-kb candidate region of PSORS1 where multiple biologically plausible candidate genes were suggested. The most recent study has indicated HLA-Cw6 as the primary PSORS1 risk allele within the candidate region in a Caucasian population. In this study, a family-based association analysis of the PSORS1 locus was performed by analyzing 10 polymorphic microsatellite markers from the PSORS1 region as well as HLA-B, HLA-C and CDSN loci in 163 Chinese families of psoriasis. Five marker loci show strong evidence (P<10⁻³), and one marker locus shows weak evidence (P=0.04) for association. The haplotype cluster analysis showed that all the risk haplotypes are Cw6 positive and share a 369-kb region of homologous marker alleles which carries all the risk alleles, including HLA-Cw6 and CDSN*TTC, identified in this study. The recombinant haplotype analysis of the HLA-Cw6 and CDSN*TTC alleles in 228 Chinese families showed that the HLA-Cw6⁻/CDSN*TTC⁺ recombinant haplotype is clearly not associated with risk for psoriasis (TNT=29:57, p=0.0025) in a Chinese population, suggesting that the CDSN*TTC allele itself does not confer risk without the presence of the HLA-Cw6 allele. The further exclusion analysis of the non-risk HLA-Cw6⁻/CDSN*TTC⁺ recombinant haplotypes with common recombination breakpoints has allowed us to refine the location of PSORS1 to a small candidate region. Finally, we performed a conditional linkage analysis and showed that the HLA-Cw6 is a major risk allele but does not explain the full linkage evidence of the PSORS1 locus in a Chinese population. By performing a series of family-based association analyses of haplotypes as well as an exclusion analysis of recombinant haplotypes, we were able to refine the PSORS1 gene to a small critical region where HLA-C is a strong candidate to be the PSORS1 susceptibility gene.     

Palmitoylation of MDH2 by ZDHHC18 activates mitochondrial respiration and accelerates ovarian cancer growth

Epithelial ovarian cancer(EOC) exhibits strong dependency on the tricarboxylic acid(TCA) cycle and oxidative phosphorylation to fuel anabolic process.Here,we show that malate dehydrogenase 2(MDH2),a key enzyme of the TCA cycle,is palmitoylated at cysteine 138(C138) residue,resulting in increased activity of MDH2.We next identify that ZDHHC18 acts as a palmitoyltransferase of MDH2.Glutamine deprivation enhances MDH2 palmitoylation by increasing the binding between ZDHHC18 and MDH2.MDH2 silencing ...     

东方蜜蜂微孢子虫腺苷酸激酶的生物信息学与基因表达特征

本研究旨在解析东方蜜蜂微孢子虫Nosema ceranae的腺苷酸激酶（Adenylat kinase, ADK）NcADK的理化性质和分子特性,并检测NcADK基因在东方蜜蜂微孢子虫侵染意大利蜜蜂Apis mellifera ligustica工蜂过程中的表达特征,以期丰富NcADK相关信息,并为进一步的功能研究提供依据。利用相关生物信息学软件预测和分析NcADK的理化性质、信号肽、磷酸化位点、二级结构和三级结构。使用MEME软件和Batch CD-Search工具分别预测东方蜜蜂微孢子虫和其它7种微孢子ADK蛋白的保守基序和保守结构域。通过Mega 11.0软件基于ADK氨基酸序列构建进化树。采用RT-qPCR检测东方蜜蜂微孢子虫侵染过程中NcADK的相对表达量。结果表明,NcADK的CDS含有540个核苷酸,可编码179个氨基酸;NcADK的分子量约为20.66 kDa,分子式为C903H1488N258O278S8,脂肪系数为100.61,平均亲水系数为-0.502,等电点为6.83,含29个负电荷氨基酸和29个正电荷氨基酸;NcADK可同时定位于细胞质、线粒体、细胞核、囊泡和过氧化物酶体;NcADK含20个磷酸化位点,不含典型的信号肽;NcADK含88个α-螺旋,24条延长链,17个β-转角,50个无规则卷曲,与模板A0A0F9WEU7.1.A之间的序列同源性为100%;在东方蜜蜂微孢子虫、东方赤孢子虫Hamiltosporidium tvaerminnensis、肠脑炎微孢子虫Encephalitozoon intestinalis、按蚊微孢子虫Anncaliia algerae和角膜条孢虫Vittaforma corneae ADK中均鉴定到1个相同的结构域和5个相同的保守基序;东方蜜蜂微孢子虫与蜜蜂微孢子虫Nosema apis的ADK在进化树上聚为一支。相较于接种后1 d（1 day post inoculation, 1 dpi）,NcADK的表达量在2 dpi上调但无显著差异(P>0.05）,在3 dpi 和4 dpi均显著上调（P>0.05）。研究结果明确了NcADK的理化性质和分子特性,并揭示NcADK是潜在的亲水性蛋白和胞内蛋白,不同微孢子虫的ADK具有较强的保守性,东方蜜蜂微孢子虫及其姐妹种蜜蜂微孢子虫的ADK具有高同源性,NcADK在3 dpi和4 dpi被激活表达。