Epibiont habitation patterns and their implications for life habits and orientation among trigoniid bivalves

The bivalve superfamily Trigoniacea has persisted from the Late Paleozoic to the Recent. Late Jurassic and terminal Cretaceous mass extinctions decimated this once-dominant group in shallow marine facies; only a single genus with seven species survives today in the Austral Province. Trigoniacea retain a vestigial byssus and primitive but efficient schizodont dentition. They have been widely considered as infaunal bivalves, burrowing with a very large foot to shallow depths, with inhalant and exhalant apertures at or slightly below the sediment-water interface (SWI). Yet the Trigoniacea are poorly adapted for this life habit. The mantle in living species is unfused and non-siphonate, and some fossil Trigoniacea have permanent shell gapes over these apertures, enhancing the probability of sediment fouling of feeding and respiratory structures. Some living Neotrigonia , e.g., N. margaritacea , solve this problem by having a semi-infaunal life habit, with the inhalant and exhalant apertures elevated above the SWI and the zone of active sediment transport. Semi-infaunal species commonly have epibionts cohabiting the exposed posterior-posteroventral portion of the shell. Numerous well-preserved species of South American Mesozoic Trigoniacea have phototropically and geotropically oriented epibionts on co-attached valves, strongly suggesting a semi-infaunal life mode for at least some members of these taxa. These shell symbionts allow orientation of extinct trigoniid shells relative to the SWI during life, as well as analysis of their depth of burial. Careful analyses of the kinds, size classes, orientation, and dispersion of various epibionts on fossil Trigoniacea thus yield important new information on their life habits, and demonstrate that semi-infaunal life modes were far more common than previously supposed.     

Influence of Well Pad Activity on Winter Habitat Selection Patterns of Mule Deer

ABSTRACT Conversion of native winter range into producing gas fields can affect the habitat selection and distribution patterns of mule deer (Odocoileus hemionus). Understanding how levels of human activity influence mule deer is necessary to evaluate mitigation measures and reduce indirect habitat loss to mule deer on winter ranges with natural gas development. We examined how 3 types of well pads with varying levels of vehicle traffic influenced mule deer habitat selection in western Wyoming during the winters of 2005–2006 and 2006–2007. Well pad types included producing wells without a liquids gathering system (LGS), producing wells with a LGS, and well pads with active directional drilling. We used 36,699 Global Positioning System locations collected from a sample (n = 31) of adult (>1.5-yr-old) female mule deer to model probability of use as a function of traffic level and other habitat covariates. We treated each deer as the experimental unit and developed a population-level resource selection function for each winter by averaging coefficients among models for individual deer. Model coefficients and predictive maps for both winters suggested that mule deer avoided all types of well pads and selected areas further from well pads with high levels of traffic. Accordingly, impacts to mule deer could probably be reduced through technology and planning that minimizes the number of well pads and amount of human activity associated with them. Our results suggested that indirect habitat loss may be reduced by approximately 38–63% when condensate and produced water are collected in LGS pipelines rather than stored at well pads and removed via tanker trucks. The LGS seemed to reduce long-term (i.e., production phase) indirect habitat loss to wintering mule deer, whereas drilling in crucial winter range created a short-term (i.e., drilling phase) increase in deer disturbance and indirect habitat loss. Recognizing how mule deer respond to different types of well pads and traffic regimes may improve the ability of agencies and industry to estimate cumulative effects and quantify indirect habitat losses associated with different development scenarios.     

Inferences About Ungulate Population Dynamics Derived From Age Ratios

Abstract: Age ratios (e.g., calf:cow for elk and fawn:doe for deer) are used regularly to monitor ungulate populations. However, it remains unclear what inferences are appropriate from this index because multiple vital rate changes can influence the observed ratio. We used modeling based on elk (Cervus elaphus) life-history to evaluate both how age ratios are influenced by stage-specific fecundity and survival and how well age ratios track population dynamics. Although all vital rates have the potential to influence calf:adult female ratios (i.e., calf:cow ratios), calf survival explained the vast majority of variation in calf:adult female ratios due to its temporal variation compared to other vital rates. Calf:adult female ratios were positively correlated with population growth rate (Λ) and often successfully indicated population trajectories. However, calf:adult female ratios performed poorly at detecting imposed declines in calf survival, suggesting that only the most severe declines would be rapidly detected. Our analyses clarify that managers can use accurate, unbiased age ratios to monitor arguably the most important components contributing to sustainable ungulate populations, survival rate of young and Λ. However, age ratios are not useful for detecting gradual declines in survival of young or making inferences about fecundity or adult survival in ungulate populations. Therefore, age ratios coupled with independent estimates of population growth or population size are necessary to monitor ungulate population demography and dynamics closely through time.     

Impact of Spatial and Temporal Variation in Calf Survival on the Growth of Elk Populations

Abstract: The realized impact of a vital rate on population growth (λ) is determined by both the relative influence of the vital rate on λ (elasticity) and its magnitude of variability. We estimated mean survival and reproductive rates in elk (Cervus elaphus) and spatial and temporal variation in these rates from 37 sources located primarily across the Rocky Mountain region and northwestern United States. We removed sampling variance from estimates of process variance both within and across vital-rate data sets using the variance discounting method developed by White (2000). Deterministic elasticities calculated from a population matrix model parameterized with these mean vital rates ranked adult female survival (e_Scow = 0.869) much higher than calf survival (e_Scalf = 0.131). However, process variance in calf survival was >11 times greater than process variance in female survival across data sets and 10 times greater on average within studies. We conducted Life-Stage Simulation Analysis to incorporate both vital-rate elasticity patterns and empirical estimates of variability to identify those vital rates most influential in elk population dynamics. The overwhelming magnitude of variation in calf survival explained 75% of the variation in the population growth rates generated from 1,000 matrix replicates, compared to just 16% of the variation in λ explained by variation in female survival. Variation in calf survival greatly impacts elk population growth and calls into question the utility of classical elasticity analysis alone for guiding elk management. These results also suggest that the majority of interannual variability that wildlife managers document in late-winter and spring elk surveys is attributable to variation in calf survival over the previous year and less influenced by variation in the harvest of females during the preceding autumn. To meet elk population size objectives, managers should consider the inherent variation in calf survival, and its apparent sensitivity to management, in addition to female harvest.     

Chemical Patterns, Compartments and a Binary Epigenetic Code in Drosophila

I propose a model which accounts for the geometries and sequencein which compartmental boundary lines arise on the differentimaginal discs, and on the blastoderm of Drosophila melanogaster;and propose that successive lines are recorded by differentbinary switches, to create a binary epigenetic code word specifyingeach disc, and disc compartment. I suppose a biochemical systemundergoing reaction and diffusion acts throughout development.As an imaginal disc grows, a succession of differently shapedchemical concentration patterns form at a discrete set of discsizes. I suppose a specific concentration of one chemical isa threshold. Concentrations above or below threshold switchcells to one or another of two commitments. Then the line acrossthe imaginal disc with the threshold concentration is a predictedcompartmental boundary. The sequence and geometries of suchlines predict the compartmental boundaries seen on the wingdisc, the other discs, and on the blastoderm stage egg. Thecompartmental lines on the wing disc suggest that a terminalcompartment is specified by a combination of binary names recordinga sequence of binary commitments: anterior, not posterior; dorsal,not ventral; wing, not thorax; proximal, not distal. Each combinationcomprises a binary epigenetic code word. Recently I constructedan independent model for transdetermination in Drosophila whichproposed a similar binary epigenetic code for the differentdiscs. The clone restriction lines predicted on the blastodermby my transdetermination model, the chemical pattern model,and analogy with the wing disc, are nearly identical. Severalare already confirmed. The resultant binary code scheme correctlypredicts many relative transdetermination frequencies and accountssimply for the action of most homeotic mutants as genes whichalter a single switch state in one or more discs.