A Simple Method for Isolating DNA of High Yield and Quality from Cotton (shape Gossypium hirsutum L.) Leaves

An easy, reproducible and fast procedure to isolate DNA from cotton leaves is described. The addition of 0.5 M glucose in the extraction buffer avoids browning by polyphenolic compounds and improves the quality of DNA for molecular analysis. The DNA yield ranged between 150–400 mg per gram of fresh tissue. The DNA was suitable for digestion by restriction enzymes and amplificatiion by Taq DNA polymerase.     

Production of trace levels of carbon monoxide during methanogenesis on acetate and methanol

Summary Production of trace levels of carbon monoxide was consistently observed in the off-gas of a laboratory anaerobic digester fed Waste Activated Sludge. Inocula from this digester was enriched for acetate and methanol utilizing methanogenic populations. These enriched inocula were then monitored in batch assays for carbon monoxide and hydrogen production. Results demonstrated that carbon monoxide is produced during methanogenesis on both substrates. Subsequent utilization of CO was observed to occur after methane production was essentially complete for the assays conducted with methanol. Carbon monoxide evolution during methanogenesis on acetate displayed a markedly different trend from that observed from methanol.     

Production of Poly-β-Hydroxyalkanoic Acid by Pseudomonas cepacia

The possibility of using the nutritionally versatile bacterium Pseudomonas cepacia to produce poly-β-hydroxyalkanoic acid was evaluated. Chemostat culture showed that growth of P. cepacia became nitrogen limited when the molar carbon-to-nitrogen ratio of the medium fed into the fermentor was above 15. When grown under nitrogen limitation in batch culture with fructose as the sole source of carbon, P. cepacia accumulated poly-β-hydroxybutyric acid (PHB) in excess of 50% of the dry weight of its biomass. In batch culture, almost no PHB was produced until the onset of nitrogen limitation. After this point, PHB was produced at a linear rate of 0.12 g liter⁻¹ h⁻¹ (from a constant value of 1.6 g of cellular protein liter⁻¹). PHB produced by P. cepacia had a weight-average molecular weight of 5.37 × 10⁵ g mol⁻¹ and a polydispersivity index of 3.9. Poly(β-hydroxybutyric acid-β-hydroxyvaleric acid) copolymer was produced with a poly-β-hydroxybutyric acid-poly-β-hydroxyvaleric acid ratio of up to 30% by weight when propionic acid was added to the medium.     

The size of a vendace, Coregonus albula L., stock in a deep lake basin monitored by hydroacoustic methods

An acoustic estimate of the number and biomass of a vendace stock (age >2 + years) in a deep basin of Lake Karjalan Pyhäjärvi was made in August 1985. The acoustic data were collected at night during the summer stagnation. The vendace were on the lake bottom during the day and rose by midnight to the hypolimnion; they did not rise to the thermocline or water layers above it. In the research area the mean number of vendace was 1900 fish ha ⁻¹ and the mean biomass was 76 kg ha ⁻¹. Total vendace biomass was 151 in the whole 200-ha research area.     

Virulence plasmid-associated autoagglutination in Yersinia spp.

The autoagglutination of Yersinia enterocolitica was dependent on the presence of the virulence plasmid and on the active growth of bacteria in tissue culture media at 37 degrees C. Cultures with a high initial concentration of bacteria failed to autoagglutinate , indicating that synthesis of new virulence plasmid-associated surface factors was essential for autoagglutination. The synthesis of a plasmid-encoded polypeptide (molecular weight, 240,000), designated P1, that could be dissociated under strongly reducing conditions into subunits of 52,500 daltons was found to be correlated with autoagglutination. Further, a strain of Yersinia pseudotuberculosis [ YPIII ( PIB102 )], which has Tn5 inserted within the structural gene of P1 that prevents the synthesis of P1, failed to autoagglutinate , in contrast to the wild-type strain, strongly indicating that P1 is involved in this phenomenon. It was also found by immunoblotting that in addition to the common response to temperature, the P1 proteins of Y. enterocolitica and Y. pseudotuberculosis were immunologically related.     

Spatial and environmental components of variation in the distribution patterns of subarctic plant species at Kevo, N Finland — a case study at the meso-scale level

This study presents a quantitative partitioning of the total variance in the patterns of occurrence of 231 vascular plant taxa in 362 1 × 1 km grids in the Kevo Nature Reserve into four independent components: purely spatial variation, spatially structured environmental variation, non-spatial environmental variation, and unexplained variation. This partitioning is done with (partial) constrained ordinations (canonical correspondence analysis) and associated Monte Carlo permutation tests. The numerical results suggest that most of the biological variance captured by the external explanatory variables is related to 'local' meso-scale environmental factors, as 12.6% of the variation in the species data is explained solely by the environmental variables. Part of the variance (6%) represents a spatially covarying environmental component, but only a very small part, ca 2%, is related to purely spatial variation. The amount of unexplained variation is very high (>75%). The results are compared and discussed in relation to the relative amounts of these four variance components at broader- and finer-scales and to the concepts of domains and transition zones of scales in biological patterning.     

Alu-Alu recombination results in a duplication of seven exons in the lysyl hydroxylase gene in a patient with the type VI variant of Ehlers-Danlos syndrome.

The type VI variant of the Ehlers-Danlos syndrome (EDS) is a recessively inherited connective-tissue disorder. The characteristic features of the variant are muscular hypotonia, kyphoscoliosis, ocular manifestations, joint hypermobility, skin fragility and hyperextensibility, and other signs of connective-tissue involvement. The biochemical defect in most but not all patients is a deficiency in lysyl hydroxylase activity. Lysyl hydroxylase is an enzyme that catalyzes the formation of hydroxylysine in collagens and other proteins with collagen-like amino acid sequences. We have recently reported an apparently homozygous large-duplication rearrangement in the gene for lysyl hydroxylase, leading to the type VI variant of EDS in two siblings. We now report an identical, apparently homozygous large duplication in an unrelated 49-year-old female originally analyzed by Sussman et al. Our simple-sequence-repeat-polymorphism analysis does not support uniparental isodisomy inheritance for either of the two duplications. Furthermore, we indicate in this study that the duplication in the lysyl hydroxylase gene is caused by an Alu-Alu recombination in both families. Cloning of the junction fragment of the duplication has allowed synthesis of appropriate primers for rapid screening for this rearrangement in other families with the type VI variant of EDS.     

Immunohistopathological studies of blastomycosis: the use of labeled specific antigens in a hamster model of disease

We applied a modified immunofluorescence and immunoperoxidase method, utilizing labeled Blastomyces dermatitidis antigens, to look for specific antibody-bearing B/ plasma cells in the tissue infiltrates of blastomycosis lesions induced in hamsters. No specific anti-blastomyces antibodies were detectable by this method, although such antibodies were present in blood samples as demonstrated by routine immunodiffusion techniques. These studies suggest that humoral immune reactions do not play a major role in the pathogenesis of lesions of blastomycosis in hamsters.     

CO2 exchange in the Empetrum nigrum-Sphagnum fuscum community

Summary The CO₂ exchange of the Empetrum nigrum-Sphagnum fuscum community of a raised bog was studied in the laboratory at different temperature (from 5 to 30° C) and irradiance (up to 128 W m^-2) combinations during one growing season. The total CO₂ exchange was divided into three components, namely those due to Empetrum nigrum, Sphagnum fuscum, and peat, respectively. At the optimum temperature (10 to 15° C) the maximum net CO₂ exchange of Empetrum nigrum was c. 200 and that of Sphagnum fuscum c. 250 mg CO₂ m^-2h^-1. The total respiration in peat increased exponentially from 50 to 350 mg CO₂ m^-2h^-1 with increasing temperature from 5 to 30° C. About 40% of the CO₂ fixed by the community in optimal temperature and irradiation conditions was released immediately.