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1.
Miikka Pakkala Anu Jylhsalmi Ping Wu Jari Leinonen Ulf‐Hkan Stenman Harri Santa Jouko Vepslinen Mikael Perkyl Ale Nrvnen 《Journal of peptide science》2004,10(7):439-447
Prostate-specific antigen (PSA), a member of the kallikrein sub-group of the trypsin serine protease family, is a widely used marker for prostate cancer. Several sequences with specific binding to PSA have been identified by using phage display peptide libraries. The GST-fusion proteins of the characterized sequences have been shown to increase the enzyme activity of PSA to a synthetic substrate. The corresponding three cyclic synthetic analogues CVFTSNYAFC (A-1), CVFAHNYNYLVC (B-2) and CVAYCIEHHCWTC (C-4) have similar PSA promoting activity. Despite differences in the amino acid sequences, all three peptides bind to the same region of PSA. The conformation of the peptides was investigated by proton NMR spectroscopy. In addition, alanine replacement was used to characterize the prerequisites for binding. It is proposed that interactions with PSA are based on the aromatic and hydrophobic features of the amino acid side chains. Furthermore, it is suggested that peptides form beta-turn structures forced by cysteine bridges directing important aromatic side chains to the same side of the turn-structure. 相似文献
2.
Many crop models relate the allocation of dry matter between shoots and roots exclusively to the crop development stage. Such models may not take into account the effects of changes in environment on allocation, unless the allocation parameters are altered. In this paper a crop model with a dynamic allocation parameter for dry matter between shoots and roots is described. The basis of the model is that a plant allocates dry matter such that its growth is maximized. Consequently, the demand and supply of carbon, nitrogen, and water is maintained in balance. This model supports the hypothesis that a functional equilibrium exists between shoots and roots.This paper explains the mathematical computation procedure of the crop model. Moreover, an analysis was made of the ability of a crop model to simulate plant dry matter production and allocation of dry matter between plant organs. The model was tested using data from a greenhouse experiment in which spring wheat (Triticum aestivum L.) was grown under different soil moisture and nitrogen (N) levels.Generally, the model simulations agreed well with data recorded for total plant dry matter. For validation data the coefficient of determination (r2) between simulated and measured shoot dry weight was 0.96. For the validation treatments r2 was slightly lower, 0.94. In addition to dry matter production the model succeeded satisfactorily in simulating the dry weight of different plant organs. The response of simulated root to shoot ratio to the level of soil moisture was mainly in accordance with the measured data. In contrast, the simulated ratio seemed to be insensitive to the changes in the levels soil N concentration used in the experiment.The data used in the present study were not extensive, and more data are needed to validate the model. However, the results showed that the model responses to the changes in soil N and water level were realistic and mostly agreed with the data. Thus, we suggest that the model and the method employed to allocate dry matter between roots and shoots are useful when modelling the growth of crops under N and water limited conditions. 相似文献
3.
Sphagnum fuscum, S. magellanicum, S. angustifolium and S. warnstorfii were treated with N deposition rates (0, 10, 30 and 100 kg ha-1 a-1) and with four atmospheric CO2 concentrations (350, 700, 1000 and 2000 ppm) in greenhouse for 71–120 days. Thereafter, concentrations of total N, P, K, Ca and Mg in the capitulae of the Sphagna were determined. The response of each species to N deposition was related to ecological differences. With increasing N deposition treatments, moss N concentrations increased and higher N:P-ratios were found, the increase being especially clear at the highest N load. Sphagnum fuscum, which occupies ombrotrophic habitats, was the most affected by the increased nitrogen load and as a consequence the other elements were decreased. Oligotrophic S. magellanicum, wide nutrient status tolerant S. angustifolium and meso-eutrophic S. warnstorfii tolerated better increased N deposition, though there were increased concentrations of Ca and Mg in S. warnstorfii and Mg in S. magellanicum. Nitrogen and P concentrations decreased with raised CO2 concentrations, except for S. magellanicum. This seems to be the first time this kind of response in nutrient concentrations to enhanced CO2 concentration has been shown to exist in bryophytes. The concentration of K clearly decreased in S. fuscum as did the concentration of Mg in the other Sphagna with increasing CO2. Sphagnum angustifolium and S. magellanicum, which are the less specialized species, were the least affected by the CO2 treatments. 相似文献
4.
Sanna Saarnio Sanna Järviö Timo Saarinen Harri Vasander Jouko Silvola 《Ecosystems》2003,6(1):0046-0060
Increasing concentrations of carbon dioxide (CO2) in the atmosphere or continuous nitrogen (N) deposition might alter the carbon (C) cycle in boreal mires and thus have significant
impacts on the development of climate change. The atmospheric impact of the C cycle in mires is twofold: C accumulation attenuates
and CH4 release strengthens the natural greenhouse effect. We studied the effects of an increased supply of CO2 or NH4NO3 on the vegetation and annual CO2 exchange in lawns of a boreal oligotrophic mire in eastern Finland over a 2-year period. Ten study plots were enclosed with
mini-FACE (Free Air Carbon Dioxide Enrichment) rings. Five plots were vented with CO2-enriched air (target 560 ppmv), while their controls were vented with ambient air; five plots were sprayed with NH4NO3, corresponding to a cumulative addition of 3 g N m−2 a−1, while their controls were sprayed with distilled water only. A raised NH4NO3 supply seemed to affect the composition of the moss layer. Raised CO2 did not affect the vegetation, but gross photosynthesis increased significantly. The change in net CO2 exchange depended on the annual weather conditions. Our results suggest that C accumulation may increase in wet years and
compensate for the warming effect caused by the increase in CH4 release from this mire. In contrast, a relatively dry and warm growing period favors decomposition and can even make the
CO2 balance negative. Along with the increased CH4 release under raised CO2, the decreased C accumulation then increases the radiative forcing of boreal mires.
Received 22 October 2001; accepted 13 May 2002. 相似文献
5.
In this study, a new concept for particle size prediction during the fluid bed granulation is presented. Using the process
measurements data obtained from a design of experimental study, predictive partial least squares models were developed for
spraying and drying phases. Measured and calculated process parameters from an instrumented fluid bed granulation environment
were used as explaining factors, whereas an in-line particle size data determined by spatial filtering technique were used
as response. Modeling was carried out by testing all possible combinations of two to six process parameters (factors) of the
total of 41 parameters. Eleven batches were used for model development and four batches for model testing. The selected models
predicted particle size (d
50) well, especially during the spraying phase (Q
2 = 0.86). While the measured in-line d
50 data were markedly influenced by different process failures, e.g., impaired fluidization activity, the predicted data remained
more consistent. This introduced concept can be applied in fluid bed granulation processes if the granulation environment
is soundly instrumented and if reliable real-time particle size data from the design of experiment batches are retrieved for
the model development. 相似文献
6.
7.
The effect of various preservation methods on the carbon content of the copepod Megacyclops gigas was studied using the carbon content of living animals as a control. No differences were found between animals dried at –20, +60, or +105°C, but in all cases the carbon content was slightly lower than that found in living animals. Chemical preservation with formaldehyde and acid Lugol's solution rapidly resulted in about 35% loss of carbon. Freezing at –20°C in water caused less marked but significant loss of carbon, whereas freezing in dilute formaldehyde yielded values agreeing with those of living animals. 相似文献
8.
Miikka Pakkala Can Hekim Pasi Soininen Jari Leinonen Hannu Koistinen Janne Weisell Ulf‐HÅkan Stenman Jouko Vepsäläinen Ale Närvänen 《Journal of peptide science》2007,13(5):348-353
Human glandular kallikrein (KLK2) is a highly prostate-specific serine protease, which is mainly excreted into the seminal fluid, but part of which is also secreted into circulation from prostatic tumors. Since the expression level of KLK2 is elevated in aggressive tumors and it has been suggested to mediate the metastasis of prostate cancer, inhibition of the proteolytic activity of KLK2 is of potential therapeutic value. We have previously identified several KLK2-specific linear peptides by phage display technology. Two of its synthetic analogs, A R R P A P A P G (KLK2a) and G A A R F K V W W A A G (KLK2b), show specific inhibition of KLK2 but their sensitivity to proteolysis in vivo may restrict their potential use as therapeutic agents. In order to improve the stability of the linear peptides for in vivo use, we have prepared cyclic analogs and compared their biological activity and their structural stability. A series of cyclic variants with cysteine bridges were synthesized. Cyclization inactivated one peptide (KLK2a) and its derivatives, while the other peptide (KLK2b) and its derivatives remained active. Furthermore, backbone cyclization of KLK2b improved significantly the resistance against proteolysis by trypsin and human plasma. Nuclear magnetic resonance studies showed that cyclization of the KLK2b peptides does not make the structures more rigid. In conclusion, we have shown that backbone cyclization of KLK2 inhibitory peptides can be used to increase stability without losing biological activity. This should render the peptides more useful for in vivo applications, such as tumor imaging and prostate cancer targeting. 相似文献
9.
Samuli Helama Matti Vartiainen Taneli Kolström Heli Peltola Jouko Meriläinen 《Vegetation History and Archaeobotany》2008,17(6):675-686
A collection of subfossil wood of Pinus sylvestris (Scots pine) was exposed to X-ray densitometry. The collection of 64 samples from the southern boreal forest zone was dendrochronologically
cross-dated to a.d. 673-1788. Growth characteristics were determined by performing density profiles including the following parameters: minimum
density, earlywood and latewood boundary density, maximum density, earlywood width, earlywood density, latewood width, latewood
density, annual ring width and annual ring density. Seven out of the nine parameters were found to contain non-climatic growth
trends and six were found to be heteroscedastic in their variance. Tree-specific records were indexed, to remove the non-climatic
growth trends and stabilize the variance, and combined into nine parameter-specific tree-ring chronologies. Growth characteristics
of the pines changed in parallel with the generally agreed climatic cooling from the Medieval Warm Period to the Little Ice
Age: pine tree-rings showed decreasing maximum densities from the period a.d. 975-1150 to a.d. 1450–1625. A concomitant change in the intra-annual growth characteristics was detected between these periods. The findings
indicate that not only the trees growing near the species’ distributional limits are sensitive to large-scale climatic variations
but also the trees growing in habitats remote from the timberline have noticeably responded to past climate changes. 相似文献
10.
Miroshnyk I Mirza S Zorky PM Heinämäki J Yli-Kauhaluoma J Yliruusi J 《Bioorganic & medicinal chemistry》2008,16(1):232-239
Quantitative analysis of the molecular conformations of the 14-membered macrolide antibiotics erythromycin A and B, clarithromycin, and roxithromycin in the solid state was performed. While the erythronolide macrocycle adopts a very similar folded-out conformation in all the macrolides studied, the proximity of the monosaccharide moieties, L-cladinose and D-desosamine, to each other is demonstrated to be the distinctive feature of their molecular conformations, based on atom-atom interaction energy analysis. More surprisingly, the common features in the relative orientation of the monosaccharide moieties (in terms of non-bonded atom-atom interactions) were revealed between the 14- and 15-membered (azithromycin) macrolide antibiotics. Herein we report on the details of the spatial arrangement of the monosaccharide moieties in these structurally related drug molecules and their influence on the biopharmaceutical properties of erythromycin derivatives. 相似文献