The interaction between HIV-1 Gag and human lysyl-tRNA synthetase during viral assembly

Human lysyl-tRNA synthetase (LysRS) is a tRNA-binding protein that is selectively packaged into HIV-1 along with its cognate tRNALys isoacceptors. Evidence exists that Gag alone is sufficient for the incorporation of LysRS into virions. Herein, using both in vitro and in vivo methods, we begin to map regions in Gag and LysRS that are required for this interaction. In vitro reactions between wild-type and truncated HIV-1 Gag and human LysRS were monitored using GST-tagged molecules and glutathione-agarose chromatography. Gag/LysRS interaction in vivo was detected in 293FT cells cotransfected with plasmids coding for wild-type or mutant HIV-1 Gag and LysRS, either by monitoring Gag.LysRS complexes immunoprecipitated from cell lysate with anti-LysRS or by measuring the ability of LysRS to be packaged into budded Gag viral-like particles. Based on these studies, we conclude that the Gag/LysRS interaction depends upon Gag sequences within the C-terminal domain of capsid (the last 54 amino acids) and amino acids 208-259 of LysRS. The latter domain includes the class II aminoacyl-tRNA synthetase consensus sequence known as motif 1. Both regions have been implicated in homodimerization of capsid and LysRS, respectively. Sequences falling outside these amino acid stretches can be deleted from either molecule without affecting the Gag/LysRS interaction, further supporting the observation that LysRS is incorporated into Gag viral-like particles independent of its ability to bind tRNALys.     

Interactive effects of salicylic acid and nitric oxide on soybean plants under NaCl salinity

The effects of salicylic acid (SA), sodium nitroprusside (SNP), a nitric oxide donor, and their combination (SA+SNP) on some physiological parameters of 23-day-old soybean seedlings grown under saline and nonsaline conditions were studied. The changes in the leaf area, shoot fresh and dry weights, contents of chlorophylls and carotenoids, amounts of MDA and hydrogen peroxide showed that the addition of 100 μM SA and/or 100 μM SNP markedly declined the oxidative damage to soybean plants induced by 50 and 100 μM NaCl. Our results proved that combined action of SA and nitric oxide donor significantly activated catalase (CAT), ascorbate peroxidase (APX), and guaiacol peroxidase (GPX), which contributed to the decay of H₂O₂ in soybean leaves under NaCl toxicity. The protective action of (SA+SNP) against saltinduced oxidative damage was often more efficient than effects of SA and SNP alone. We also observed that the accumulation of proline was apparently accelerated by these substances under salt stress. As well, it was observed that the interaction between SA and nitric oxide had synergistic effects in decreasing of the damages induced by NaCl salinity.     

Fluid particle diffusion through high-hematocrit blood flow within a capillary tube

Fluid particle diffusion through blood flow within a capillary tube is an important phenomenon to understand, especially for studies in mass transport in the microcirculation as well as in solving technical issues involved in mixing in biomedical microdevices. In this paper, the spreading of tracer particles through up to 20% hematocrit blood, flowing in a capillary tube, was studied using a confocal micro-PTV system. We tracked hundreds of particles in high-hematocrit blood and measured the radial dispersion coefficient. Results yielded significant enhancement of the particle diffusion, due to a micron-scale flow-field generated by red blood cell motions. By increasing the flow rate, the particle dispersion increased almost linearly under constant hematocrit levels. The particle dispersion also showed near linear dependency on hematocrit up to 20%. A scaling analysis of the results, on the assumption that the tracer trajectories were unbiased random walks, was shown to capture the main features of the results. The dispersion of tracer particles was about 0.7 times that of RBCs. These findings provide good insight into transport phenomena in the microcirculation and in biomedical microdevices.     

The alleviating effects of selenium and salicylic acid in salinity exposed soybean

This research was conducted to screen various treatments of selenium (Se) and/or salicylic acid (SA) to mitigate signs of salinity on soybean. Seedlings were treated with three concentrations of Se (0, 25 and 50 mg l^?1), two concentrations of SA (0 and 0.5 mM) and/or two concentrations of NaCl (0 and 100 mM). Se and/or SA had significant enhancing and alleviating effects on the chlorophyll a (Chl a) and carotenoid contents as well as, Chl a/b in the treated plants, but had adverse effects on the Chl b concentrations. The limiting effects of salinity on leaf area and dry mass were significantly eased by the Se and/or SA among which 25 mg l^?1 Se and combined treatment of 50 mg l^?1 Se and SA were the most effective. The utilization of Se and/or SA led to the improved proline and Mg contents, compared to the control. The supplemented Se and/or SA, especially the mixed ones, resulted in a significant decrease in Na/K ratios. Se and/or SA had significant inducing effects on enzymatic (peroxidase, catalase and superoxide dismutase) and non-enzymatic (ascorbate) antioxidant system. On the basis of the obtained results, it could be stated that the foliar utilization of Se in combination with SA may be used to relieve the signs of salinity stress.     

Dominant role of the 5' TAR bulge in dimerization of HIV-1 genomic RNA, but no evidence of TAR-TAR kissing during in vivo virus assembly

The 5' untranslated region of HIV-1 genomic RNA (gRNA) contains two stem-loop structures that appear to be equally important for gRNA dimerization: the 57-nucleotide 5' TAR, at the very 5' end, and the 35-nucleotide SL1 (nucleotides 243-277). SL1 is well-known for containing the dimerization initiation site (DIS) in its apical loop. The DIS is a six-nucleotide palindrome. Here, we investigated the mechanism of TAR-directed gRNA dimerization. We found that the trinucleotide bulge (UCU24) of the 5' TAR has dominant impacts on both formation of HIV-1 RNA dimers and maturation of the formed dimers. The ΔUCU trinucleotide deletion strongly inhibited the first process and blocked the other, thus impairing gRNA dimerization as severely as deletion of the entire 5' TAR, and more severely than deletion of the DIS, inactivation of the viral protease, or most severe mutations in the nucleocapsid protein. The apical loop of TAR contains a 10-nucleotide palindrome that has been postulated to stimulate gRNA dimerization by a TAR-TAR kissing mechanism analogous to the one used by SL1 to stimulate dimerization. Using mutations that strongly destabilize formation of the TAR palindrome duplex, as well as compensatory mutations that restore duplex formation to a wild-type-like level, we found no evidence of TAR-TAR kissing, even though mutations nullifying the kissing potential of the TAR palindrome could impair dimerization by a mechanism other than hindering of SL1. However, nullifying the kissing potential of TAR had much less severe effects than ΔUCU. By not uncovering a dimerization mechanism intrinsic to TAR, our data suggest that TAR mutations exert their effect 3' of TAR, yet not on SL1, because TAR and SL1 mutations have synergistic effects on gRNA dimerization.