Life‐history traits and geographical divergence in wild rice (Oryza rufipogon) gene pool in Indochina Peninsula region

Indochina Peninsula is the primary centre of diversity of rice and lies partly in the centre of origin of cultivated rice (Oryza sativa) where the wild ancestor (Oryza rufipogon) is still abundant. The wild gene pool is potentially endangered by urbanisation and the expansion of agriculture, and by introgression hybridisation with locally cultivated rice varieties. To determine genetic diversity and structure of the wild rice of the region we genotyped nearly 1000 individuals using 20 microsatellite loci. We found ecological differentiation in 48 populations, distinguishable by their life‐history traits and the country of origin. Geographical divergence was suggested by isolation of the perennial Myanmar populations from those of Cambodia, Laos and Thailand. The annual types would be most likely to have lost genetic variation because of genetic drift and inbreeding. The growing of cultivated and wild rice together, however, gives ample opportunities for hybridisation, which already shows signs of genetic mixing, and will ultimately lead to replacement of the original wild rice gene pool. For conservation we suggest that wild rice should be conserved ex situ in order to prevent introgression from cultivated rice, along with in situ conservation in individual countries for the recurrent evolutionary process through local adaptation, but with sufficient isolation from cultivated rice fields to preserve genetic integrity of the wild populations.     

Genotypic variation in plant response to low boron and implications for plant breeding

Plant response to low B in the soil varies widely among species, and among genotypes within a species. Boron efficient genotypes are those that are able to grow well in soils in which other genotypes are adversely affected by B deficiency. This review considers the extent of variation in B efficiency in plant species and genotypes, the physiological nature of the efficiency mechanisms, what is known of the genetic basis for inheritance, screening techniques and the practical implications of the genotypic variations.Frequently, B efficiency is the sole reason for a difference between an average yield and complete crop failure. Severe yield losses can be effectively prevented by the inclusion of B efficiency as a selection criterion in crop breeding and improvement programmes for regions with low B soils. In addition, the expression of B deficiency primarily through male sterility, which is common in many species, creates opportunities for outcrossing in normally self-fertilised species. This, in turn, leads to two possibilities. Firstly, self fertilisation, and therefore maintenance of pure lines, cannot always be assumed in self pollinated species where B efficient and inefficient genotypes are grown side by side on low B soils. Secondly, B deficiency, in soil or artificial media, may be used as a fertility selective medium in which the male sterile B inefficient genotypes and the male fertile B efficient genotypes could hybridise naturally. This would be useful as a simple and economical method for creating heterozygous populations in breeding programmes as well as for producing hybrid seeds. Now that the roles of B in plant growth and development are beginning to be clarified, the efficiency mechanisms as well as the governing genetics can be explained. Practical benefits from the genetic diversity of B efficiency will be enhanced by a better understanding of B efficiency mechanisms and the molecular bases for their genetic control.     

Boron deficiency in maize

Boron (B) deficiency depresses wheat, barley and triticale yield through male sterility. On the basis of field responses to B fertilization, maize (Zea mays L.) is affected by B deficiency in five continents. In a series of sand culture trials with maize subject to B0 (nil added B) and B20 (20???M added B) treatments, we described how B deficiency depressed maize grain yield while showing an imperceptible effect on vegetative dry weight. With manual application of pollen to the silk of each plant, B0 plants produced 0.4 grain ear^?1 compared with 410 grains ear^?1 in B20 plants. Symptoms of B deficiency was observed only in B0 plants, which exhibited symptoms of narrow white to transparent lengthwise streaks on leaves, multiple but small and abnormal ears with very short silk, small tassels with some branches emerging dead, and small, shrivelled anthers devoid of pollen. Tassels, silk and pollen of B0 plants contained only 3?C4?mg B kg^?1 DW compared with twice or more B in these reproductive tissues in B20 plants. A cross-fertilization experiment showed that, although the tassels and pollen were more affected, the silk was more sensitive to B deficiency. Pollen from B20 plants applied to B0 silk produced almost no grains, while pollen from B0 on B20 silk increased the number of grains to 37% of the 452 grains plant^?1 produced from B20 pollen on B20 silk. Therefore, the silk of the first ear may be targeted for precise diagnosis of B status at maize reproduction, for timely correction by foliar B application, and even for B-efficient genotype selection.     

Variation in responses to boron in rice

Background and aims

Boron (B) deficiency depresses grain set and grain yield of wheat and maize while having little effect on their vegetative growth. This paper describes effects of B deficiency in rice and how these vary with planting season and variety.

Methods

Three rice varieties (KDML105, CNT1, SPR1) were grown in sand culture without (B0) and with 10 μM (B10) B added to the nutrient solution, in the cool season of 2007/08 and 2008/09 and the hot season of 2011 in Chiang Mai, Thailand (18°47′N, 98°59′E). Boron responses were measured in growth and yield parameters, pollen viability and B concentration of the flag leaf and anthers at anthesis.

Results

Grain weight was strongly depressed by B deficiency ranging from 28 % in SPR1 to 79 % in CNT1, and the yield was much lower in the cool season than in the hot season plantings. The variation in grain weight was closely associated with grain set and number of spikelets but not with shoot dry weight or tillering. Grain set was closely related to pollen viability, and both were increased with increasing anther B concentration at >20 mg B kg^?1. In addition to its adverse effect on grain set, B deficiency also depressed grain filling and weight of individual grains in rice.

Conclusions

Boron deficiency depressed rice grain yield through adverse effects on reproductive growth, panicle and spikelet formation and grain filling, in addition to grain set as in wheat and maize.     

Farmers Drive Genetic Diversity of Thai Purple Rice (Oryza sativa L.) Landraces

Purple or black rice (Oryza sativa L.) is a culturally important germplasm in Asia with a long history of cultivation in northern Thailand. Purple rice is identified by the color of the rice pericarp, which varies from purple to black with the accumulation of phenolic acids, flavonoids, and anthocyanins. In the present study, we assessed molecular variation within and between wetland purple rice landraces germplasm from northern and northeastern Thailand using 12 microsatellite loci. All purple rice varieties surveyed showed high levels of homozygosity within varieties and strong genetic differentiation among varieties, indicating the fixation of genetic differences among them. This pattern is consistent with purple rice farming practices in northern Thailand, where a small portion of harvested seed is selected and replanted based on farmers’ preferences. The reduced genetic diversity and high homozygosity observed for purple rice is also consistent with patterns expected for this inbreeding crop. Genetic differentiation among the varieties showed some degree of structuring based on their geographical origin. Taken together, these data highlight that the genetic diversity and structure of wetland purple rice landraces is shaped by farmer utilization and cultivation through local cultural practices, and that conservation should focus on ex situ conservation across its cultivation range, along with on-farm, in situ conservation based on farmers’ seed-saving practices. In situ conservation may prove especially valuable for preserving the genetic identity of local varieties and promote adaptation to local environments.

     

Productivity limiting impacts of boron deficiency,a review

Plant and Soil - In the almost century since the establishment of boron (B) as an essential plant nutrient, its roles in plant growth and development have been identified, and the mechanism for B...     

Genotypic variation in milling depression of iron and zinc concentration in rice grain

Plant and Soil - The loss of iron and zinc during milling to produce white rice can have serious consequences for human health. Therefore, the objective was to evaluate Fe and Zn partitioning...     

Phenotypic and Genetic Diversity of Local <Emphasis Type="Italic">Perilla</Emphasis> (<Emphasis Type="Italic">Perilla frutescens</Emphasis> (L.) Britt.) from Northern Thailand

Phenotypic and Genetic Diversity of Local Perilla ( Perilla frutescens (L.) Britt.) from Northern Thailand. Perilla frutescens (L.) Britt., an important oil and culinary crop in Asia, is a valuable genetic resource. Despite its nutritional value and historic and cultural importance, research on Perilla has been scarce, particularly as far as its genetic diversity is concerned. The aims of the present study were to assess variability within and between 29 seed samples of P. frutescens collected from farmers in northern Thailand, and evaluation conducted of their genetic, morphological, and agronomic characteristics, and the seed composition, including polyunsaturated fatty acids omega-3, omega-6, and omega-9, and the vitamin E γ-tocopherols. Perilla frutescens (L.) Britt. of northern Thailand is genetically variable, and structured according to origin of collection which was the consequence of local adaptation. The discovery of high levels of polyunsaturated fatty acids, namely α-linolenic acid and γ-tocopherols, in some Perilla samples indicates the potential for utilizing Perilla for its high omega-3 content including as a vitamin E supplement for humans, a prospect that should be taken into account when planning conservation strategies or when Perilla variability is used in breeding programs.     

Genotypic variation in response of barley to boron deficiency

Responses of a range of barley (Hordeum vulgare L.) genotypes to boron (B) deficiency were studied in two experiments carried out in sand culture and in the field at Chiang Mai, Thailand. In experiment 1, two barley genotypes, Stirling (two-row) and BRB 2 (six-row) and one wheat (Triticum aestivum L.) genotype, SW 41, were evaluated in sand culture with three levels of applied B (0, 0.1 and 1.0 μM B) to the nutrient solution. It was found that B deficiency depressed flag leaf B concentration at booting, grain number and grain yield of all genotypes. In barley Stirling, B deficiency also depressed number of spikes plant^-1, spikelets spike^-1 and straw yield. However, no significant difference between genotypes in flag leaf B concentration was found under low B treatments. Flag leaf B concentration below 4 mg kg^-1 was associated with grain set reduction and could, therefore, be used as a general indicator for B status in barley. In experiment 2, nine barley and two wheat genotypes were evaluated in the field on a low B soil with three levels of B. Boron levels were varied by applying either 2 t of lime ha^-1 (BL), no B (B0) or 10 kg Borax ha^-1 (B+) to the soil prior to sowing. Genotypes differed in their B response for grain spike^-1, grain spikelet^-1 and grain set index (GSI). The GSI of the B efficient wheat, Fang 60, exceeded 90% in all B treatments. The B inefficient wheat SW 41 and most of the barley genotypes set grain normally (GSI >80%) only at the B+. In B0 GSI of the barley genotypes ranged from 23% to 84%, and in BL from 19% to 65%. Three of the barley with severely depressed GSI in B0 and BL also had a decreased number of spikelets spike^-1. In experiment 3, 21 advanced barley lines from the Barley Thailand Yield Nursery 1997/98 (BTYN 1997/98) were screened for B response in sand culture with no added B. Grain Set Index of the Fang 60 and SW 41 checks were 98 and 65%, respectively, and GSI of barley lines ranged between 5 and 90%. One advanced line was identified as B efficient and two as moderately B efficient. The remaining lines ranked between moderately inefficient to inefficient. These experiments have established that there is a range of responses to B in barley genotypes. This variation in the B response was observed in vegetative as well as reproductive growth. Boron efficiency should be considered in breeding and selection of barley in low B soils. This revised version was published online in June 2006 with corrections to the Cover Date.     

Contrasting responses to boron deficiency in barley and wheat

Plant and Soil - To determine if boron (B) deficiency, commonly reported to depress grain set in wheat, has the same effect in barley, a set of experiments compared five wheat and seven barley...