Localized, Cold-Induced Inhibition of Translocation in Mycelia and Strands of Serpula lacrimans

Thompson, W., Brownlee, C, Jennings, D. H. and Mortimer, A.M. 1987. Localized, cold-induce inhibition of translocationin mycelia and strands of Serpula lacrimans. —J. exp.Bot. 38: 889–899 The effect has been investigated of localized low temperatureon translocation of ³²P across myceliui of Serpula lacrimansusing two gas-flow detectors capable of recording radioactivitycontinuously. When the temperature of a band of mycelium wasreduced to 0 ? C, radioactivity ceased to accumulai and in factdeclined under the detector (number 2) separated from the sourceof radioactivity by tr cold-treated mycelium. In the myceliumbeneath the other detector (number 1), closest to the sourceradioactivity, the rate of accumulation of radioactivity increased.When the temperature was raised t 20 ?C, radioactivity beganto accumulate in the mycelium under detector 2 and, apart froma sma fluctuation, continued to accumulate at a uniform rate.In the mycelium under detector 1, the accumulation of radioactivitystopped for a short time but then recommenced at a rate similarto thi found at 0 ?C. In other experiments the distributionof radioactivity (¹⁴C) throughout the myceliui was measuredat the end in homogenized samples. In these experiments a bandof mycelium we subjected to 0 ?C or to 20 ?C for the whole experimentalperiod, or only after the mycelium had bee translocating radioactivityalready for 16 h. These experiments showed that the changesin the rate of accumulation of ³²P in living mycelium underthe two gas flow detectors used for in situ measurements werenot due to a reversal of the flow of translocation. The resultsare consistent with an hypothesis that a turgor-driven massflow of solution is the mechanism for translocation in thisfungus and are considered in relation to the results of similarexperiments on phloem translocation in higher plants. Key words: Serpula lacrimans, mycelium, translocation, low-temperature, phloem transport     

Internal Structure and Hydraulic Conductivity of Basidiomycete Translocating Organs

Eamus, D., Thompson, W., Cairney, J. W. G. and Jennings, D.H. 1985. Internal structure and hydraulic conductivity of basidiomycetetranslocating organs.–J. exp. Bot. 36: 1110–1116. The presence in rhizomorphs of Armillaria mellea and cords ofPhallus impudicus of wide diameter hyphae (5–20 {diaeresis}m),which run for considerable distances along these linear organs,has been demonstrated. The longitudinal hydraulic conductivityof these organs has been determined experimentally and similarvalues were obtained when the hydraulic conductivity was calculatedtheoretically on the basis that the vessel hyphae were the solechannel for water movement along these organs. The experimentaldata have been discussed in relation to other data for long-distancetranslocation in basidiomycete linear organs. It is concludedthat the vessel hyphae are the main channels for turgor-driventranslocation. Key words: -Basidiomycete fungi, translocation, hydraulic conductivity     

A comparative description of mitochondrial DNA differentiation in selected avian and other vertebrate genera

Levels of mitochondrial DNA (mtDNA) sequence divergence between species within each of several avian (Anas, Aythya, Dendroica, Melospiza, and Zonotrichia) and nonavian (Lepomis and Hyla) vertebrate genera were compared. An analysis of digestion profiles generated by 13-18 restriction endonucleases indicates little overlap in magnitude of mtDNA divergence for the avian versus nonavian taxa examined. In 55 interspecific comparisons among the avian congeners, the fraction of identical fragment lengths (F) ranged from 0.26 to 0.96 (F = 0.46), and, given certain assumptions, these translate into estimates of nucleotide sequence divergence (p) ranging from 0.007 to 0.088; in 46 comparisons among the fish and amphibian congeners, F values ranged from 0.00 to 0.36 (F = 0.09), yielding estimates of P greater than 0.070. The small mtDNA distances among avian congeners are associated with protein-electrophoretic distances (D values) less than approximately 0.2, while the mtDNA distances among assayed fish and amphibian congeners are associated with D values usually greater than 0.4. Since the conservative pattern of protein differentiation previously reported for many avian versus nonavian taxa now appears to be paralleled by a conservative pattern of mtDNA divergence, it seems increasingly likely that many avian species have shared more recent common ancestors than have their nonavian taxonomic counterparts. However, estimates of avian divergence times derived from mtDNA- and protein-calibrated clocks cannot readily be reconciled with some published dates based on limited fossil remains. If the earlier paleontological interpretations are valid, then protein and mtDNA evolution must be somewhat decelerated in birds. The empirical and conceptual issues raised by these findings are highly analogous to those in the long-standing debate about rates of molecular evolution and times of separation of ancestral hominids from African apes.      

Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes

Statistical methods for computing the standard errors of the branching points of an evolutionary tree are developed. These methods are for the unweighted pair-group method-determined (UPGMA) trees reconstructed from molecular data such as amino acid sequences, nucleotide sequences, restriction-sites data, and electrophoretic distances. They were applied to data for the human, chimpanzee, gorilla, orangutan, and gibbon species. Among the four different sets of data used, DNA sequences for an 895-nucleotide segment of mitochondrial DNA (Brown et al. 1982) gave the most reliable tree, whereas electrophoretic data (Bruce and Ayala 1979) gave the least reliable one. The DNA sequence data suggested that the chimpanzee is the closest and that the gorilla is the next closest to the human species. The orangutan and gibbon are more distantly related to man than is the gorilla. This topology of the tree is in agreement with that for the tree obtained from chromosomal studies and DNA-hybridization experiments. However, the difference between the branching point for the human and the chimpanzee species and that for the gorilla species and the human-chimpanzee group is not statistically significant. In addition to this analysis, various factors that affect the accuracy of an estimated tree are discussed.      

Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves

A puzzling population-genetic phenomenon widely reported in allozyme surveys of marine bivalves is the occurrence of heterozygote deficits relative to Hardy-Weinberg expectations. Possible explanations for this pattern are categorized with respect to whether the effects should be confined to protein-level assays or are genomically pervasive and expected to be registered in both protein- and DNA-level assays. Anonymous nuclear DNA markers from the American oyster were employed to reexamine the phenomenon. In assays based on the polymerase chain reaction (PCR), two DNA-level processes were encountered that can lead to artifactual genotypic scorings: (a) differential amplification of alleles at a target locus and (b) amplification from multiple paralogous loci. We describe symptoms of these complications and prescribe methods that should generally help to ameliorate them. When artifactual scorings at two anonymous DNA loci in the American oyster were corrected, Hardy-Weinberg deviations registered in preliminary population assays decreased to nonsignificant values. Implications of these findings for the heterozygote-deficit phenomenon in marine bivalves, and for the general development and use of PCR-based assays, are discussed.      

A highly conserved nuclear gene for low-level phylogenetics: elongation factor-1 alpha recovers morphology-based tree for heliothine moths

Molecular systematists need increased access to nuclear genes. Highly conserved, low copy number protein-encoding nuclear genes have attractive features for phylogenetic inference but have heretofore been applied mostly to very ancient divergences. By virtue of their synonymous substitutions, such genes should contain a wealth of information about lower-level taxonomic relationships as well, with the advantage that amino acid conservatism makes both alignment and primer definition straightforward. We tested this postulate for the elongation factor-1 alpha (EF-1 alpha) gene in the noctuid moth subfamily Heliothinae, which has probably diversified since the middle Tertiary. We sequenced 1,240 bp in 18 taxa representing heliothine groupings strongly supported by previous morphological and allozyme studies. The single most parsimonious gene tree and the neighbor-joining tree for all nucleotides show almost complete concordance with the morphological tree. Homoplasy and pairwise divergence levels are low, transition/transversion ratios are high, and phylogenetic information is spread evenly across gene regions. The EF-1 alpha gene and presumably other highly conserved genes hold much promise for phylogenetics of Tertiary age eukaryote groups.