Theoretical analysis of the relation between the cell state and pathways of carbon isotope fractionation in metabolic processes

On a dynamic model of fractionation of carbon isotopes in the living cell there are considered relationships between the distribution of carbon isotopes in the structures approximating basic biochemical fractions, their isotopic composition and parameters characterizing the dynamics of carbon metabolism, i.e. efficient carbon isotope separation factor in pyruvate enzymic decarboxylation, degree of its transformation at primary and secondary decarboxylation and ratios between the currents of carbon substrates. A wide range of variations of cell isotope parameters resulting from the change of its functional states was revealed. Possible applications of the relationships observed for studying biological systems are shown.     

Approach to Minimize Damage Resulting from Microelectrode Insertion into Neuron

Biophysics - Penetration of a microelectrode into the cell soma is one of the most vulnerable stages of the method intracellular recording. Traumatic neuronal activity after piercing the membrane...     

A decrease in heat insulation of the black-clawed brush-furred rat (<Emphasis Type="Italic">Lophuromys melanonyx</Emphasis>, Petter) during adaptation to high altitudes

The results of the body-surface infrared thermography of rodents of the genus Lophuromys suggest that heat insulation of the black-clawed brush-furred rat L. melanonyx, a large specialized species of the AfroAlpine zone, is worse than that of the related smaller species, the golden-footed (L. chrysopus) and shorttailed (L. brevicaudus) brush-furred rats, that inhabit tropical forest and Erica shrub, respectively. A decrease in heat insulation of the alpine species may facilitate the use of solar radiation for supporting heat balance of these diurnal animals.     

Viscoelastic features of adhesive setae of the tokay gecko (<Emphasis Type="Italic">Gekko gecko</Emphasis> L.)

Deformations of particular setae of adhesive toe pad of the tokay gecko were investigated by atomic-force microscopy. The effective elastic modulus of the investigated setae varying within 0.34–19 GPa, a pronounced hysteresis was observed during reversible bending of setae. The hysteresis-related energy losses may be as high as 98% of the total bending work. The pronounced viscous features of the setae contradict the hypothesis of dynamic self-cleaning of the gecko adhesive cover, according to which the setae are considered as absolutely elastic cantilever beams.     

Study of the positional relationship of nucleolar chromatin and nucleolar compartments in somatic nuclei OPF the ciliate Didinium nasutum

We showed earlier that nucleoli in interphase ciliates Didinium nasutum, appearing on single ultrathin sections as individual structures, actually are parts of more complex network-like structures in which fibrillar component is located on periphery, and granular--in the central part of a nucleolus. It is known, that nucleolar organizers in D. nasutum are represented by chromatin bodies connected with nucleoli. In this work we used 3D reconstruction on the basis of serial ultrathin sections to study localization of chromatin bodies which by morphological criteria might correspond to nucleolar organizers. Our data showed, that all such chromatin bodies settled down outside of nucleoli, near the periphery of fibrillar component. Even those chromatin bodies which on single sections looked completely surrounded by fibrillar nucleolar component, actually settled down in fibrillar component cavities open to nucleoplasm. Analysis of distribution of nucleolar chromatin bodies allowed us to conclude that activity in different parts of interphase complex network-like nucleoli of D. nasutum is approximately the same.     

Three-dimensional structure of the ciliate Didinium nasutum nucleoli

The nucleolar organization in ciliate Didinium nasutum somatic interphase nuclei was studied using serial ultrathin sections and compared for various physiological states of the cell, namely, fed ciliates, starved ciliates, and dormant cysts. It has been shown that the interphase nucleoli are large structures with a complex architecture: the fibrillar component forms an intricate network in the macronucleus space, while the granular component is located inside this network. The structures looking as individual nucleoli in single sections are actually parts of branched nucleolar networks. The intricate nucleolar networks do not disintegrate after a 30-h starvation; however, the granular component becomes denser and develops numerous cavities filled with fine fibrils of a nonribonucleoprotein nature. In fed D. nasutum, the fibrillar structures on the periphery of nucleoli contain numerous pores (virtually absent in starved cell nucleoli), which can potentially serve for transporting newly synthesized rRNP. Branched nucleolar networks are undetectable in cysts. Their nucleoli are individual structures consisting mainly of the fibrogranular component.     

Three-dimensional organization of nucleoli of Didinium nasutum (Ciliata)

A comparative study of nucleolar organization in the somatic nuclei of the ciliate Didinium nasutum was carried out using 3D reconstruction on the basis of serial ultrathin sections. Recently fed interphase ciliates, starved interphase ciliates and cysts were studied. The nucleoli at the interphase stage were shown to have a complex architecture: the fibrillar component forms a complicated network, the granular component is located inside of it. It was shown that nucleoli, which look like individual structures in single sections, are in fact parts of branched nucleolar networks. A 30-h starvation doesn't lead to disintegration of these networks. However in the starved cells the granular component becomes more dense and vacuolized. In the fed ciliates there are many holes in the fibrillar component, whereas in starved ones the fibrillar component is virtually devoid of them. These holes can be proposed to ensure the transport of newly synthesized rRNP. The nucleolar networks didn't occur in D. nasutum cysts. Nucleoli in the cysts look like small individual structures, mainly consisting of fibrogranular component.     

Carbon isotope (13C/12C) effect of photorespiration in photosynthetic organisms. Evidence for existence, probable mechanism

Experimental evidence in favor of the new phenomenon predicted for photosynthesizing organisms, the fractionation of carbon isotopes in photorespiration is presented. A possible mechanism of this process is discussed. The fractionation of carbon in isotopes photorespiration occurs in the oxygenase phase of the functioning of ribulosebisphosphate carboxylase/oxygenase (rubisco), the key enzyme of photosynthesis, which is capable to act as carboxylase and oxygenase. Which function of the enzyme is active depends on CO2/O2 concentration ratio, which periodically changes in a cell. The key reaction in the mechanism of carbon isotope fractionation in photorespiration is glycine decarboxylation, which results in the splitting and removal from the cell of CO2 enriched with 12C and the accumulation of 13C photorespiratory carbon flow. The coupling of photorespiration and CO2 photoassimilation gives rise to two isotopically different carbon flows, which fill up separate carbohydrate pools, which are the sources of carbon in the following syntheses in the dark phase of photosynthesis. This enables one to identify, from the carbon isotope ratio of metabolites, their involvement in the photorespiratory and assimilatory carbon flows, to investigate the pathways of carbon metabolism, and to estimate more thoroughly the biosynthetic role of photorespiration.     

Theoretical analysis of the possibility of existence of oscillations in photosynthesis

A mathematical model for carbohydrate and carbon dioxide metabolism in a chloroplast has been constructed. If it is taken into consideration that the rate of the efflux of sugars is restricted as their concentration increases, then even with a simplified representation of the work of the Calvin cycle, it can be shown that there is a set of the parameters of the model at which stable oscillations can appear in the system.