Partial Opsin Sequences Suggest UV-Sensitive Vision is Widespread in Caudata

Ultraviolet (UV) vision exists in several animal groups. Intuitively, one would expect this trait to be favoured in species living in bright environments, where UV light is the most present. However, UV sensitivity, as deduced from sequences of UV photoreceptors and/or ocular media transmittance, is also present in nocturnal species, raising questions about the selective pressure maintaining this perceptual ability. Amphibians are among the most nocturnal vertebrates but their visual ecology remains poorly understood relative to other groups. Perhaps because many of these species breed in environments that filter out a large part of UV radiation, physiological and behavioural studies of UV sensitivity in this group are scarce. We investigated the extent of UV vision in Caudata, the order of amphibians with the most nocturnal habits. We could recover sequences of the UV sensitive SWS1 opsin in 40 out of 58 species, belonging to 6 families. In all of these species, the evidence suggests the presence of functional SWS1 opsins under purifying selection, potentially allowing UV vision. Interestingly, most species whose opsin genes failed to amplify exhibited particular ecological features that could drive the loss of UV vision. This likely wide distribution of functional UV photoreceptors in Caudata sheds a new light on the visual ecology of amphibians and questions the function of UV vision in nocturnal animal species.     

Antioxidant and antimicrobial actions of the clubmoss <Emphasis Type="Italic">Lycopodium clavatum</Emphasis> L.

Purpose of the present study was to evaluate antioxidant, antibacterial, antifungal, and antiviral activities of the petroleum ether, chloroform, ethyl acetate and methanol extracts as well as the alkaloid fraction of Lycopodium clavatum L. (LC) from Lycopodiaceae growing in Turkey. Antioxidant activity of the LC extracts was evaluated by 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical-scavenging method at 0.2 mg/ml using microplate-reader assay. Antiviral assessment of LC extracts was evaluated towards the DNA virus Herpes simplex (HSV) and the RNA virus Parainfluenza (PI-3) using Madin-Darby Bovine Kidney (MDBK) and Vero cell lines. Antibacterial and antifungal activities of the extracts were tested against standard and isolated strains of the following bacteria; Escherichia coli, Pseudomonas aeruginosa, Proteus mirabilis, Acinobacter baumannii, Klebsiella pneumoniae, Staphylococcus aureus, Bacillus subtilis as well as the fungi; Candida albicans and C. parapsilosis. All of the extracts possessed noteworthy activity against ATCC strain of S. aureus (4 μg/ml), while the LC extracts showed reasonable antifungal effect. On the other hand, we found that only the chloroform extract was active against HSV (16–8 μg/ml), while petroleum ether and alkaloid extracts inhibited potently PI-3 (16–4 μg/ml and 32–4 μg/ml, respectively). However, all of the extracts had insignificant antiradical effect on DPPH. In addition, we also analyzed the content of the alkaloid fraction of the plant by capillary gas chromatography-mass spectrometry (GC-MS) and identified lycopodine as the major alkaloid.     

Structural investigation of the glandular trichomes of <Emphasis Type="Italic">Salvia argentea</Emphasis>

The morphology, anatomy and distribution of glandular trichomes on the aerial organs of Salvia argentea L. has been investigated. Two morphologically distinct types of glandular trichomes were determined. Capitate glandular trichomes forming a base 1–7 celled, a stalk 1–5 celled or no stalk and a head uni- or bicellular had various types. In capitate trichomes, the neck cell that has an important role especially for xeroformic plants, acting to prevent the backflow of secreted substance through the apoplast has been distinctively observed in the investigated species. The capitate trichomes were present abundantly on all aerial organs of S. argentea. Peltate glandular trichomes had a large secretory head forming 1–5, 8 central and 8–10, 12, 14 peripheral cells. Peltate trichomes are present on all aerial organs, except petiole, being the most abundant on calyx and corolla. Results were shown by tables and photographs.     

Sleep stage and obstructive apneaic epoch classification using single-lead ECG

Background  

Polysomnography (PSG) is used to define physiological sleep and different physiological sleep stages, to assess sleep quality and diagnose many types of sleep disorders such as obstructive sleep apnea. However, PSG requires not only the connection of various sensors and electrodes to the subject but also spending the night in a bed that is different from the subject's own bed. This study is designed to investigate the feasibility of automatic classification of sleep stages and obstructive apneaic epochs using only the features derived from a single-lead electrocardiography (ECG) signal.     

Ultrastructural Changes in the Kidney of Rats with Acute Exposure to Cadmium and Effects of Exogenous Metallothionein

Ultrastructural changes in the kidneys of rats after acute cadmium exposure and the effects of exogenous metallothionein (MT) were studied by transmission electron microscopy. Thirty-six adult Wistar rats were divided into three groups. Cadmium chloride (CdCl₂) (3.5 mg/kg/day) was injected subcutaneously in the first group. In the second group, 30 μmol/kg MT was administered in addition to CdCl₂. Control rats received 0.5 ml subcutaneous saline solution. Four rats from each group were killed on days 1, 3, 5, and 7 after administration of the compounds. Kidney tissues were taken and fixed in 2.5% glutaraldehyde solution for electron microscopic observations. Tissue damage in kidney increased as time passed since the administration of CdCl₂ in the first group. Degeneration in the proximal and distal tubules was observed. Increased apoptosis was seen in the proximal tubules epithelium, especially on day 7. Peritubular capillaries became dilated, there was degeneration of the endothelial cells, and the amount of intertubular collagen fibers was increased. On day 1, irregular microvilli in the proximal tubules, deepening of the basal striations, and myelin figures; on day 3, multiple vesicular mitochondria and regions of edema around tubules; on days 5 and 7, increased apoptotic cell in the proximal tubules and widened rough endoplasmic reticulum of the endothelial cells of glomerular capillaries were observed. We observed that the structural alterations that increased depending on the day of Cd administration decreased after exogenous MT administration, the dilation of the peritubular capillaries persisted, and there were degenerated proximal tubules. It was established that cadmium chloride was toxic for kidney cortex and caused structural damage. Exogenous MT partly prevents CdCl₂-induced damage.     

Chlorine transport in a small catchment in southeast Sweden during two years

Previous studies have revealed that chlorine participates in a complex biogeochemical cycle in soil, which suggests that the transport of chloride through catchments may also be influenced. The present study is based on field observations of organic carbon, chloride (Cl_in), and chlorinated organic carbon (Cl_org) in precipitation, soil, and runoff over a 2-year period from a small, forested catchment in southeast Sweden. The study reveals that (1) the soil pool is dominated by Cl_org, (2) the input via wet deposition and output of Cl_in via runoff is 30 times smaller than the total storage of chlorine (Cl_in + Cl_org) in soil, and (3) the transport is dominated by Cl_in. The organic matter that entered the outlet of the catchment was more chlorinated in the autumn than during the rest of the year, and rain events taking place in low-flow periods had a greater influence on TOC, Cl_org, and Cl_in than did rain events taking place in high-flow periods. The seasonal pattern in combination with the low-flow versus high-flow pattern and previous findings of increasing chlorine-to-carbon ratios with soil depth suggests that the chlorine-to-carbon ratio variation in the leached organic matter is due that water preferentially comes from deeper layers in low-flow conditions. This study provides well-founded estimates of Cl_org and Cl_in storage and fluxes for the studied catchment; however, the processes underlying the observed seasonal Cl_org variations and transportation processes need further study.     

Cardiovascular events in early RA are a result of inflammatory burden and traditional risk factors: a five year prospective study

Introduction  

Co-morbidity and mortality due to cardiovascular disease (CVD) are increased in patients with rheumatoid arthritis (RA). Most published studies in this field are retrospective or cross sectional. We investigated the presence of traditional and disease related risk factors for CVD at the onset of RA and during the first five years following diagnosis. We also evaluated their potential for predicting a new cardiovascular event (CVE) during the five-year follow-up period and the modulatory effect of pharmacological treatment.     

A novel method to calculate climatic niche similarity among species with restricted ranges—the case of terrestrial Lycian salamanders

Within the framework of the present study we test whether climatic niche similarity can be identified in a monophyletic group of species inhabiting remarkably restricted ranges by pooling presence data of all species into a single concatenated data set and subsequently jackknifing single species. We expect that, when the jackknifed species differs markedly in its climatic niche from all other species, this approach will result in increased niche homogeneity, allowing assessments of niche divergence patterns. To test our novel jackknife approach, we developed species distribution models for all members of Lycian salamanders (genus Lyciasalamandra), native to Turkey and the adjacent Aegean islands using Maxent. Degrees of niche similarity among species were assessed using Schoener’s index. Significance of results was tested using null-models. The degree of niche similarity was generally high among all seven species, with only L. helverseni differing significantly from the others. Carstic lime stones providing specific microhabitat features may explain the high degree of niche similarity detected, since the variables with the highest explanative power in our models (i.e. mean temperature, and precipitation of the coldest quarter) corresponded well with salamander natural history observations, supporting the biologically plausibility of the results. We conclude that the jackknife approach presented here for the first time allows testing for niche similarity in species inhabiting restricted ranges and with few species records available. Our results strongly support the view that detailed natural history information and knowledge of microhabitats is crucial when assessing possible climate change impacts on species.     

Screening for fungal antagonists to control black mold disease and to induce the accumulation of antifungal compounds in onion after seed treatment

Twelve isolates belonging to the genera Aspergillus, Penicillium, and Trichoderma, from onion (Allium cepa L.)-growing soils were recently found to have antagonistic features against Aspergillus niger (An) van Tieghem, the cause of black mold disease of onion, in dual culture. In the work reported in this paper, the function of these isolates applied as seed treatment on onion seed germination was investigated. In addition, isolates with no negative effect on seeds were screened for their effect on shoot length, and for their abilities to inhibit colonization of An on seeds, to control black mold disease, to increase set bulb diameter, and to induce production of antifungal compounds in pot-grown onion sets. Application of non-aflatoxigenic A. flavus Link (AS3), T. harzianum Rifai (TRIC7) and (TRIC8) to seeds led to defense reactions with accumulation of antifungal compounds in sets, combined with increased protection against the disease, although they did not enhance bulb diameter.