Viral ecology and the maintenance of novel host use

Viruses can occasionally emerge by infecting new host species. However, the early phases of emergence can hinge upon ecological sustainability of the virus population, which is a product of both within-host population growth and between-host transmission. Insufficient growth or transmission can force virus extinction before the latter phases of emergence, where genetic adaptations that improve host use may occur. We examined the early phase of emergence by studying the population dynamics of RNA phages in replicated laboratory environments containing native and novel host bacteria. To predict the breadth of transmission rates allowing viral persistence on each species, we developed a simple model based on in vitro data for phage growth rate over a range of initial population densities on both hosts. Validation of these predictions using serial passage experiments revealed a range of transmission rates for which the native host was a source and the novel host was a sink. In this critical range of transmission rates, periodic exposure to the native host was sufficient for the maintenance of the viral population on the novel host. We argue that this effect should facilitate adaptation by the virus to utilize the novel host--often crucial in subsequent phases of emergence.     

A Novel Glucose 6-Phosphate Isomerase from Listeria monocytogenes

d-Arabinose 5-phosphate isomerases (APIs) catalyze the interconversion of d-ribulose 5-phosphate and d-arabinose 5-phosphate (A5P). A5P is an intermediate in the biosynthesis of 3-deoxy-d-manno-octulosonate (Kdo), an essential component of lipopolysaccharide, the lipopolysaccharide found in the outer membrane of Gram-negative bacteria. The genome of the Gram-positive pathogen Listeria monocytogenes contains a gene encoding a putative sugar isomerase domain API, Q723E8, with significant similarity to c3406, the only one of four APIs from Escherichia coli CFT073 that lacks a cystathionine-β-synthase domain. However, L. monocytogenes lacks genes encoding any of the other enzymes of the Kdo biosynthesis pathway. Realizing that the discovery of an API in a Gram-positive bacterium could provide insight into an alternate physiological role of A5P in the cell, we prepared and purified recombinant Q723E8. We found that Q723E8 does not possess API activity, but instead is a novel GPI (d-glucose 6-phosphate isomerase). However, the GPI activity of Q723E8 is weak compared with previously described GPIs. L. monocytogenes contains an ortholog of the well-studied two-domain bacterial GPI, so this maybe redundant. Based on this evidence glucose utilization is likely not the primary physiological role of Q723E8.     

Laser Temperature-Jump Technique for Relaxation Studies of the Ionic Conductances in Myelinated Nerve Fibers

A temperature-jump technique for single nodes of Ranvier has been developed using a pulsed laser system. The temperature perturbation was accomplished by firing the laser beam obtained from a neodymium rod through the solution surrounding a single node. The temperature step was achieved within 1 msec using the laser in the normal mode of operation. During the voltage-clamped steady-state current a temperature jump from 4°C increased the current to a new steady-state value within the time course of the T-jump. This finding suggests that the maximum potassium permeability P_K has a rapid relaxation time and that the steady-state value of n (the value of potassium permeability divided by its maximum value) is relatively independent of temperature. T-jumps applied during the voltage-clamped sodium currents showed that the sodium permeability changed with a relaxation time that was also shorter than the duration of the normal mode laser output. T-jumps observed during a hyperpolarization or at the resting potential showed no detectable conductance change. When a T-jump immediately preceded a voltage clamp pulse the technique was then used to investigate the effect of changes in the steady-state temperature on the ionic conductances. It was found that the magnitude of the change in membrane current due to a T-clamp was directly related to the level of cathodal polarization.     

The cytoadherence linked asexual gene family of Plasmodium falciparum: are there roles other than cytoadherence?

The binding of erythrocytes infected with Plasmodium falciparum to the endothelium lining the small blood vessels of the brain and other organs can mediate severe pathology. A region at the right end of chromosome 9 has been implicated in the binding of parasitised erythrocytes to the endothelial receptor CD36. A gene expressed in asexual erythrocytic stage parasites has been identified in this region and termed the cytoadherence linked asexual gene (clag). Antisense RNA production and targeted gene disruption of clag resulted in greatly reduced binding to CD36. Hybridisation to 3D7 chromosomes showed clag to be a part of a gene family of at least nine members. All members analysed so far have a conserved gene structure of at least nine exons, as well as putative transmembrane domains. The possible functions of the gene family are discussed.     

HCN Channels Are Not Required for Mechanotransduction in Sensory Hair Cells of the Mouse Inner Ear

The molecular composition of the hair cell transduction channel has not been identified. Here we explore the novel hypothesis that hair cell transduction channels include HCN subunits. The HCN family of ion channels includes four members, HCN1-4. They were orginally identified as the molecular correlates of the hyperpolarization-activated, cyclic nucleotide gated ion channels that carry currents known as I_f, I_Q or I_h. However, based on recent evidence it has been suggested that HCN subunits may also be components of the elusive hair cell transduction channel. To investigate this hypothesis we examined expression of mRNA that encodes HCN1-4 in sensory epithelia of the mouse inner ear, immunolocalization of HCN subunits 1, 2 and 4, uptake of the transduction channel permeable dye, FM1-43 and electrophysiological measurement of mechanotransduction current. Dye uptake and transduction current were assayed in cochlear and vestibular hair cells of wildtype mice exposed to HCN channel blockers or a dominant-negative form of HCN2 that contained a pore mutation and in mutant mice that lacked HCN1, HCN2 or both. We found robust expression of HCNs 1, 2 and 4 but little evidence that localized HCN subunits in hair bundles, the site of mechanotransduction. Although high concentrations of the HCN antagonist, ZD7288, blocked 50–70% of the transduction current, we found no reduction of transduction current in either cochlear or vestibular hair cells of HCN1- or HCN2- deficient mice relative to wild-type mice. Furthermore, mice that lacked both HCN1 and HCN2 also had normal transduction currents. Lastly, we found that mice exposed to the dominant-negative mutant form of HCN2 had normal transduction currents as well. Taken together, the evidence suggests that HCN subunits are not required for mechanotransduction in hair cells of the mouse inner ear.     

Fire Frequency and Mosaic Burning Effects on a Tallgrass Prairie Ground Beetle Assemblage

Fire frequency has significant effects on the biota of tallgrass prairie, including mammals, vascular plants and birds. Recent concern has been expressed that widespread annual burning, sometimes in combination with heavy livestock grazing, negatively impacts the biota of remaining prairie remnants. A common management recommendation, intended to address this problem, is to create a landscape with a mosaic of different burn regimes. Pitfall trapping was used to investigate the impacts of fire pattern on the diversity and species composition of ground beetles (Coleoptera: Carabidae) at Konza Prairie Biological Station in eastern Kansas, USA. Trapping was conducted over three seasons in landscape units burned on average every 1, 4, or 20 years, and in a fourth season across the available range of vegetative structure to assess the variability of the community within the study system. In the fifth season communities were also followed immediately after two fire events to detect within-season effects of fire and to study short-term patterns of post-disturbance community assembly. Fire frequency had comparatively minimal effects on ground beetle diversity measures, and most numerically common species were observed widely across habitat and management types. Fire frequency effects were manifested primarily in changes in abundance of common species. Colonization of burned areas apparently did not occur from juxtaposed non-burned areas, but from underground or from long distances. While these results suggest that widespread annual burning of tallgrass prairie remnants may not have dramatic effects on prairie ground beetles, we urge caution regarding the application of these results to other taxa within tallgrass prairie.     

Biosynthesis of dystroglycan: processing of a precursor propeptide

Dystroglycan is a cytoskeleton-linked extracellular matrix receptor expressed in many cell types. Dystroglycan is composed of alpha- and beta-subunits which are encoded by a single mRNA. Using a heterologous mammalian expression system, we provide the first biochemical evidence of the alpha/beta-dystroglycan precursor propeptide prior to enzymatic cleavage. This 160 kDa dystroglycan propeptide is processed into alpha- and beta-dystroglycan (120 kDa and 43 kDa, respectively). We also demonstrate that the precursor propeptide is glycosylated and that blockade of asparagine-linked (N-linked) glycosylation did not prevent the cleavage of the dystroglycan precursor peptide. However, inhibition of N-linked glycosylation results in aberrant trafficking of the alpha- and beta-dystroglycan subunits to the plasma membrane. Thus, dystroglycan is synthesized as a precursor propeptide that is post-translationally cleaved and differentially glycosylated to yield alpha- and beta-dystroglycan.     

Predation,apparent competition,and the structure of prey communities

It is argued that alternate prey species in the diet of a food-limited generalist predator should reduce each other's equilibrial abundances, whether or not they directly compete. Such indirect, interspecific interactions are labeled apparent competition. Two examples are discussed in which an observed pattern of habitat segregation was at first interpreted as evidence for direct competition, but later interpreted as apparent competition resulting from shared predation. In order to study the consequences of predator-mediated apparent competition in isolation from other complicating factors, a model community is analyzed in which there is no direct interspecific competition among the prey. An explicit necessary condition for prey species coexistence is derived for the case of one predator feeding on many prey species. This model community has several interesting properties: (1) Prey species with high relative values for a parameter $\text{r}\text{a}$ are “keystone” species in the community; (2) prey species can be excluded from the community by “diffuse” apparent competition; (3) large changes in the niche breadth of the predator need not correspond to large changes in predator density; (4) the prey trophic level as a whole is regulated by the predator, yet each of its constituent species is regulated by both the predator and available resources; (5) increased productivity may either increase, decrease, or leave unchanged the number of species in the community; (6) a decrease in density-independent mortality may decrease species diversity. These conclusions seem to be robust to changes in the prey growth equations and to the incorporation of predator satiation. By contrast, adding prey refugia or predator switching to the model weakens these conclusions. If the predator can be satiated or switched, the elements a_ij comprising the community matrix may have signs opposite the long-term effect of j upon i. The effect of natural selection upon prey species coexistence is discussed. Unless r_i, K_i, and a_i are tightly coupled, natural selection within prey species i will tend to decrease the equilibrial abundance of species j.