Hyphal morphogenesis in Aspergillus nidulans

The formation of hyphae that grow solely by apical extension is a defining feature of filamentous fungi. Hyphal morphogenesis involves several key steps, including the establishment and maintenance of a stable polarity axis, as well as cell division via the deposition of septa. Several filamentous fungi have been employed in attempts to decipher the mechanisms underlying these steps. Amongst these fungi, Aspergillus nidulans has proven to be a particularly valuable model. The genetic tractability of this fungus coupled with the availability of sophisticated post-genomics resources has enabled the identification and characterization of numerous genes involved in hyphal morphogenesis. Here, we summarize current progress towards understanding the function of these genes and the mechanisms involved in polarized hyphal growth and septation in A. nidulans. We also highlight important areas for future investigation.     

基于遗传算法的土地利用优化：NSGA-Ⅱ和NSGA-Ⅲ的对比研究

土地利用优化通常要兼顾不同群体的多种要求,理论上是复杂的超多目标(4个及以上)优化问题。但实际操作中却往往被简化为多目标(2—3个)优化问题,通过一种流行的多目标优化算法第Ⅱ代非支配排序遗传算法(NSGA-Ⅱ)求解。究其原因是对超多目标优化算法认知的缺失和与多目标优化算法理论对比的匮乏。对NSGA系列中应用最广泛的多目标优化算法NSGA-Ⅱ和最新提出、面向超多目标优化的算法NSGA-Ⅲ进行探究,从理论和实验两方面对Ⅲ和Ⅱ进行对比,从而探究二者进行土地利用优化时的优劣。在理论上,对比两种算法原理的异同。在实验中,分别设计多目标(3个目标)和超多目标(13个目标)土地利用优化问题,利用两种算法进行求解。对实验结果采用四层架构、六大指标进行全面评价,以对比两种算法的可用性。理论对比发现,两个算法只有种群多样性保护的方法不同,其中NSGA-Ⅲ是基于与固定的参考点的距离,而NSGA-Ⅱ则是基于相邻解间的距离。通过实验对比发现,NSGA-Ⅲ在超多目标优化时运算速度快,且产生的最优方案实用价值更高,NSGA-Ⅱ在算法的有效性方面更有优势。     

A 3-hydroxy-3-methylglutaryl-CoA synthase-based probe for the discovery of the acyltransferase-less type I polyketide synthases

Acyltransferase (AT)-less type I polyketide synthases (PKSs) produce complex natural products due to the presence of many unique tailoring enzymes. The 3-hydroxy-3-methylglutaryl coenzyme A synthases (HCSs) are responsible for β-alkylation of the growing polyketide intermediates in AT-less type I PKSs. In this study, we discovered a large group of HCSs, closely associated with the characterized and orphan AT-less type I PKSs through in silico genome mining, sequence and genome neighbourhood network analyses. Using HCS-based probes, the survey of 1207 in-house strains and 18 soil samples from different geographic locations revealed the vast diversity of HCS-containing AT-less type I PKSs. The presence of HCSs in many AT-less type I PKSs suggests their co-evolutionary relationship. This study provides a new probe to study the abundance and diversity of AT-less type I PKSs in the environment and microbial strain collections. Our study should inspire future efforts to discover new polyketide natural products from AT-less type I PKSs.     

Environmental and techno-economic analyses of bio-jet fuel produced from jatropha and castor oilseeds in China

Purpose

Bio-jet fuel derived from energy crops has been promoted by governments around the world through policies such as the Carbon Offsetting and Reduction Scheme for International Aviation. The environmental impact and techno-economic analysis of bio-jet fuel are particularly pertinent to China because China is under huge pressure to reduce emissions, endeavouring to meet bio-economic goals.

Methods

An LCA study was conducted on the production of bio-jet fuel from jatropha and castor by estimating the well-to-wake emissions and its economic impact. The functional unit was 1 MJ of bio-jet fuel, and field survey data was used in inventory analysis. A scenario analysis was performed to measure diverse conditions, including the planting conditions, planting regions, allocation methods, and hydrogen sources. A techno-economic analysis that combined the production costs and co-product credits was performed to calculate the minimum bio-jet fuel selling price (MJSP) based on a plant capacity of 2400 metric tonnes of feedstock per day.

Results and discussion

Compared to the environmental impacts to the fossil jet fuel, the use of biofuel would reduce the majority environmental impacts by 36–85%, when a 1:1 displacement of fossil jet fuel is considered, though the human toxicity potential impact was 100% higher. The scenario analysis indicated that (i) planting castor in harsh and unevenly distributed conditions and jatropha in stable or fertile conditions can leverage their respective advantage; (ii) the global warming potential (GWP) from castor planting in the region of north-east China ranges from 34 to 48 g CO₂ eq/MJ; (iii) the GWP produced through the steam methane reforming process can be reduced by 16–17%, using advances in technological processes. The MJSP for fuel produced from jatropha and castor under the basic scenario is estimated to be 5.68 and 4.66 CNY/kg, respectively, which falls within the current market price range of 4.5–7.5 CNY/kg.

Conclusions

Bio-jet fuel from jatropha and castor oilseeds offers potential environmental benefits if they can reduce fossil jet fuel on an energy-equivalent basis. However, these benefits are likely to be reduced by the rebound effect of the fuel market. Future research is needed to better understand the magnitude of the rebound effect in China and what policy interventions can be implemented to alleviate it. Scenario analysis demonstrated the feasibility and potential of bio-jet fuel development from multiple perspectives and technological progress are conducive to the realization of environmental protection policies.

     

Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta?

Dear Editor, A series of studies had focused on the ecological stability of human microbiome (Lozupone et al.,2012;Faith et al.,2013;Moya and Ferrer,2016).Despite the continuous perturbation and the highly personalized composition within the human microbiome (Human Microbiome Project,2012),healthy adults stably maintain their microbial communities in terms of space and time (Faith et al.,2013;Moya and Ferrer,2016;Oh et al.,2016).This stability is proved to be critical for the well-being of human body (Lozupone et al.,2012).On the contrary,major shifts in microbial community composition are often related to diseases (Lynch and Pedersen,2016).     

Beneficial Effects of Schisandrin B on the Cardiac Function in Mice Model of Myocardial Infarction

The fruit of Schisandra chinensis has been used in the traditional Chinese medicine for thousands of years. Accumulating evidence suggests that Schisandrin B (Sch B) has cardioprotection effect on myocardial ischemia in vitro. However, it is unclear whether Sch B has beneficial effects on continuous myocardial ischemia in vivo. The aim of the present study was to investigate whether Sch B could improve cardiac function and attenuate myocardial remodeling after myocardial infarction (MI) in mice. Mice model of MI was established by permanent ligation of the left anterior descending (LAD) coronary artery. Then the MI mice were randomly treated with Sch B or vehicle alone. After treatment for 3 weeks, Sch B could increase survival rate, improve heart function and decrease infarct size compared with vehicle. Moreover, Sch B could down-regulate some inflammatory cytokines, activate eNOS pathway, inhibit cell apoptosis, and enhance cell proliferation. Further in vitro study on H9c2 cells showed similar effects of Sch B on prevention of hypoxia-induced inflammation and cell apoptosis. Taken together, our results demonstrate that Sch B can reduce inflammation, inhibit apoptosis, and improve cardiac function after ischemic injury. It represents a potential novel therapeutic approach for treatment of ischemic heart disease.     

Profile and Determinants of Retinal Optical Intensity in Normal Eyes with Spectral Domain Optical Coherence Tomography

Purpose

To investigate the profile and determinants of retinal optical intensity in normal subjects using 3D spectral domain optical coherence tomography (SD OCT).

Methods

A total of 231 eyes from 231 healthy subjects ranging in age from 18 to 80 years were included and underwent a 3D OCT scan. Forty-four eyes were randomly chosen to be scanned by two operators for reproducibility analysis. Distribution of optical intensity of each layer and regions specified by the Early Treatment of Diabetic Retinopathy Study (ETDRS) were investigated by analyzing the OCT raw data with our automatic graph-based algorithm. Univariate and multivariate analyses were performed between retinal optical intensity and sex, age, height, weight, spherical equivalent (SE), axial length, image quality, disc area and rim/disc area ratio (R/D area ratio).

Results

For optical intensity measurements, the intraclass correlation coefficient of each layer ranged from 0.815 to 0.941, indicating good reproducibility. Optical intensity was lowest in the central area of retinal nerve fiber layer, ganglion cell layer, inner plexiform layer, inner nuclear layer, outer plexiform layer and photoreceptor layer, except for the retinal pigment epithelium (RPE). Optical intensity was positively correlated with image quality in all retinal layers (0.553<β<0.851, p<0.01), and negatively correlated with age in most retinal layers (-0.362<β<-0.179, p<0.01), except for the RPE (β = 0.456, p<0.01), outer nuclear layer and photoreceptor layer (p>0.05). There was no relationship between retinal optical intensity and sex, height, weight, SE, axial length, disc area and R/D area ratio.

Conclusions

There was a specific pattern of distribution of retinal optical intensity in different regions. The optical intensity was affected by image quality and age. Image quality can be used as a reference for normalization. The effect of age needs to be taken into consideration when using OCT for diagnosis.     

2种中草药对福寿螺的杀灭效果及对肝脏影响

【目的】有效控制福寿螺产生的危害,为实现中草药的资源化利用提供依据。【方法】以甘草、陈皮为植物源灭螺剂,进行不同浓度梯度(0、0.5、1.5、3.0、4.5、6.0 g·L^-1)提取液浸泡下的灭螺活性探究。【结果】甘草组、陈皮组处理下福寿螺死亡率随时间的增长在不同浓度下毒杀效果明显。对48 h时福寿螺死亡率数据进行概率单位法回归分析,发现甘草组(LC₂₅、LC₅₀、LC₇₅)<陈皮组(LC₂₅、LC₅₀、LC₇₅),说明福寿螺对甘草更敏感。为进一步探究福寿螺死亡原因,在前期研究的基础上深入探讨甘草、陈皮提取液对福寿螺的肝脏的影响,在亚致死浓度甘草0.511 g·L^-1(LC₂₅)、0.940 g·L^-1(LC₅₀)、1.727 g·L^-1(LC₇₅)和陈皮3.892 g·L^-1...     

An Improved Approach of Mesh Segmentation to Extract Feature Regions

The objective of this paper is to extract concave and convex feature regions via segmenting surface mesh of a mechanical part whose surface geometry exhibits drastic variations and concave-convex features are equally important when modeling. Referring to the original approach based on the minima rule (MR) in cognitive science, we have created a revised minima rule (RMR) and presented an improved approach based on RMR in the paper. Using the logarithmic function in terms of the minimum curvatures that are normalized by the expectation and the standard deviation on the vertices of the mesh, we determined the solution formulas for the feature vertices according to RMR. Because only a small range of the threshold parameters was selected from in the determined formulas, an iterative process was implemented to realize the automatic selection of thresholds. Finally according to the obtained feature vertices, the feature edges and facets were obtained by growing neighbors. The improved approach overcomes the inherent inadequacies of the original approach for our objective in the paper, realizes full automation without setting parameters, and obtains better results compared with the latest conventional approaches. We demonstrated the feasibility and superiority of our approach by performing certain experimental comparisons.     

Synthesis of cellulose adipate derivatives

Cellulose esters containing adipates and other ester groups are synthesized by the reaction of commercially available cellulose esters in solution with the benzyl monoester of adipoyl chloride. The products, cellulose adipate esters in which the distal end of the adipate moiety is a benzyl ester, were easily converted to cellulose adipate derivatives by Pd-catalyzed hydrogenation. These cellulose adipate derivatives are promising biopolymers for drug delivery and other applications in which water-dispersion or swelling are desired.