The substrate bin—a new sampling device for studying diel vertical migratory movements on to and off lake sediments

The substrate bin, used to study diel migratory movements of the copepod Pseudodiaptomus hessei on to and off bottom interfacial areas is described. It consists essentially of a transparent Perspex box open at its upper end and supported upright within a metal framework. A lid, hinged along one face of the open end of the bin, opens and closes automatically through a simple system of levers as the apparatus is lowered on to or raised off a solid substrate. The apparatus is lowered on to the lake bed where it opens. Diel movements on to or off the shallow layer of bottom substrate enclosed within the bin can be examined by retrieving bins serially at different times. Using this apparatus in conjunction with standard net sampling techniques, clear evidence for an alternation of benthic and pelagic phases during diel cycles was obtained. Notwithstanding an apparent oversampling of the benthic component, the magnitude of which cannot be defined precisely, it is concluded that the apparatus provides a simple and reliable method of sampling.     

A comparative description of mitochondrial DNA differentiation in selected avian and other vertebrate genera

Levels of mitochondrial DNA (mtDNA) sequence divergence between species within each of several avian (Anas, Aythya, Dendroica, Melospiza, and Zonotrichia) and nonavian (Lepomis and Hyla) vertebrate genera were compared. An analysis of digestion profiles generated by 13-18 restriction endonucleases indicates little overlap in magnitude of mtDNA divergence for the avian versus nonavian taxa examined. In 55 interspecific comparisons among the avian congeners, the fraction of identical fragment lengths (F) ranged from 0.26 to 0.96 (F = 0.46), and, given certain assumptions, these translate into estimates of nucleotide sequence divergence (p) ranging from 0.007 to 0.088; in 46 comparisons among the fish and amphibian congeners, F values ranged from 0.00 to 0.36 (F = 0.09), yielding estimates of P greater than 0.070. The small mtDNA distances among avian congeners are associated with protein-electrophoretic distances (D values) less than approximately 0.2, while the mtDNA distances among assayed fish and amphibian congeners are associated with D values usually greater than 0.4. Since the conservative pattern of protein differentiation previously reported for many avian versus nonavian taxa now appears to be paralleled by a conservative pattern of mtDNA divergence, it seems increasingly likely that many avian species have shared more recent common ancestors than have their nonavian taxonomic counterparts. However, estimates of avian divergence times derived from mtDNA- and protein-calibrated clocks cannot readily be reconciled with some published dates based on limited fossil remains. If the earlier paleontological interpretations are valid, then protein and mtDNA evolution must be somewhat decelerated in birds. The empirical and conceptual issues raised by these findings are highly analogous to those in the long-standing debate about rates of molecular evolution and times of separation of ancestral hominids from African apes.      

Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes

Statistical methods for computing the standard errors of the branching points of an evolutionary tree are developed. These methods are for the unweighted pair-group method-determined (UPGMA) trees reconstructed from molecular data such as amino acid sequences, nucleotide sequences, restriction-sites data, and electrophoretic distances. They were applied to data for the human, chimpanzee, gorilla, orangutan, and gibbon species. Among the four different sets of data used, DNA sequences for an 895-nucleotide segment of mitochondrial DNA (Brown et al. 1982) gave the most reliable tree, whereas electrophoretic data (Bruce and Ayala 1979) gave the least reliable one. The DNA sequence data suggested that the chimpanzee is the closest and that the gorilla is the next closest to the human species. The orangutan and gibbon are more distantly related to man than is the gorilla. This topology of the tree is in agreement with that for the tree obtained from chromosomal studies and DNA-hybridization experiments. However, the difference between the branching point for the human and the chimpanzee species and that for the gorilla species and the human-chimpanzee group is not statistically significant. In addition to this analysis, various factors that affect the accuracy of an estimated tree are discussed.      

Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves

A puzzling population-genetic phenomenon widely reported in allozyme surveys of marine bivalves is the occurrence of heterozygote deficits relative to Hardy-Weinberg expectations. Possible explanations for this pattern are categorized with respect to whether the effects should be confined to protein-level assays or are genomically pervasive and expected to be registered in both protein- and DNA-level assays. Anonymous nuclear DNA markers from the American oyster were employed to reexamine the phenomenon. In assays based on the polymerase chain reaction (PCR), two DNA-level processes were encountered that can lead to artifactual genotypic scorings: (a) differential amplification of alleles at a target locus and (b) amplification from multiple paralogous loci. We describe symptoms of these complications and prescribe methods that should generally help to ameliorate them. When artifactual scorings at two anonymous DNA loci in the American oyster were corrected, Hardy-Weinberg deviations registered in preliminary population assays decreased to nonsignificant values. Implications of these findings for the heterozygote-deficit phenomenon in marine bivalves, and for the general development and use of PCR-based assays, are discussed.      

Nutritional suitability of some uni-algal diets for freshwater calanoids: unexpected inadequacies of commonly used edible greens and others

• 1 Naupliar and copepodid development times (Dn and Dc, respectively) of two African freshwater calanoids (Metadiaptomus meridianus and Tropodiaptomus spectabilis) were measured on mono-specific diets of comparably sized Chlamydomonas reinhardii, Scenedesmus acutus, Cryptomonas sp., Rhodomonas minuta, Cyclotella meneghiniana, and Selenastrum capricornutum, to test the nutritional adequacy of these algae. Comparisons were made at a standard temperature (17°C) and food supply level (1 mgCl^?1).
• 2 All diets other than Scenedesmus and Selenastrum supported complete naupliar development at broadly comparable times within and between calanoids, apart from greatly protracted Dn values for M. meridianus on Cyclotella. Dc durations were more variable between diet types, and both Chlamydomonas and Cyclotella were inferior or inadequate for copepodid development.
• 3 Both naupliar and copepodid stages ingested radiolabelled Scenedesmus and Selenastrum readily. Comparative incorporation rate measures of Selenastrum and Cryptomonas respectively exceeded estimated metabolic maintenance needs of stage 3/4 nauplii of T. spectabilis by some 56% and 790%. Scope for growth (‘surplus’ energy) was accordingly fourteen-fold greater on Cryptomonas than on Selenastrum /Scenedesmus. The dietary inadequacy of these two green algae is thus attributed largely to low digestibility, and perhaps some biochemical deficiency.