Molecular Pathway Reconstruction and Analysis of Disturbed Gene Expression in Depressed Individuals Who Died by Suicide

Molecular mechanisms behind the etiology and pathophysiology of major depressive disorder and suicide remain largely unknown. Recent molecular studies of expression of serotonin, GABA and CRH receptors in various brain regions have demonstrated that molecular factors may contribute to the development of depressive disorder and suicide behaviour. Here, we used microarray analysis to examine the expression of genes in brain tissue (frontopolar cortex) of individuals who had been diagnosed with major depressive disorder and died by suicide, and those who had died suddenly without a history of depression. We analyzed the list of differentially expressed genes using pathway analysis, which is an assumption-free approach to analyze microarray data. Our analysis revealed that the differentially expressed genes formed functional networks that were implicated in cell to cell signaling related to synapse maturation, neuronal growth and neuronal complexity. We further validated these data by randomly choosing (100 times) similarly sized gene lists and subjecting these lists to the same analyses. Random gene lists did not provide highly connected gene networks like those generated by the differentially expressed list derived from our samples. We also found through correlational analysis that the gene expression of control participants was more highly coordinated than in the MDD/suicide group. These data suggest that among depressed individuals who died by suicide, wide ranging perturbations of gene expression exist that are critical for normal synaptic connectively, morphology and cell to cell communication.     

Structure-based drug design identifies novel LPA3 antagonists

Compound 5 ([5-(3-nitrophenoxy)-1,3-dioxo-1,3-dihydro-2-isoindol-2-yl]acetic acid) was identified as a weak selective LPA₃ antagonist (IC₅₀ = 4504 nM) in a virtual screening effort to optimize a dual LPA_{2 and 3} antagonist. Structure-based drug design techniques were used to prioritize similarity search matches of compound 5. This strategy rapidly identified 10 novel antagonists. The two most efficacious compounds identified inhibit activation of the LPA₃ receptor by 200 nM LPA with IC₅₀ values of 752 nM and 2992 nM. These compounds additionally define changes to our previously reported pharmacophore that will improve its ability to identify more potent and selective LPA₃ receptor antagonists. The results of the combined computational and experimental screening are reported.     

Digit flexor muscles in the cat: their action and motor units

The relation between muscle action and the mechanical properties of motor units has been explored in the main digit flexors of the cat hind limb: plantaris (PL); flexor digitorum brevis (FDB); flexor hallucis longus (FHL); and, flexor digitorum longus (FDL). General observations on muscle action revealed that PL is an ankle extensor as well as a digit flexor. PL and FHL were shown to be the major force contributors to digit flexion with FDL playing a lesser but still significant role. The mechanical properties of PL, FHL and FDB motor units were studied by noting twitch and tetanic tensions produced by electrical stimulation of single alpha axons, functionally isolated from the ventral root filaments. These data were compared to similar data reported by Olson and Swett (1966) for flexor digitorum longus (FDL). Our sample (114 PL, 60 FDB and 124 FHL units) disclosed that PL, FDB and FHL have units of uniformly fast contraction times (means 22, 27 and 27 msec respectively). PL units developed the most tetanic tension (3 to 160, mean 62 gm-wt) followed by FHL (2 to 87, mean 31 gm-wt) with FDB units producing very little tension (1 to 20, mean 6 gm-wt). Swett and Olson's FDL sample (108 units) showed tensions ranging from 0.3 to 100 gm-wt (mean 10 gm-wt). A division of labor among the four muscles is proposed. The large PL units are advantageous for forceful phasic inputs to the digits during the locomotion and in keeping with PL's additional role as an ankle exstensor. The low output forces of FDB units are optimal for discrete input to the digits during subtle adjustments of posture. We propose that the larger fast contracting units of FHL are used primarily for forceful digit flexions required in locomotion and for phasic protrusion of the claws while the predominately small and slow contracting units of FDL are used for sustained claw protrusion.     

Simulated environmental effects of wetland restoration scenarios in a typical Canadian prairie watershed

Wetland conservation and restoration contribute to improved watershed functions through providing both water quantity benefits in terms of flood attenuation and water quality benefits such as retention of sediment and nutrients. However, it is important to quantify these environmental benefits for informed decision making. This study uses a “hydrologic equivalent wetland” concept in the Soil and Water Assessment Tool to examine the effects of various wetland restoration scenarios on stream flow and sediment at a watershed scale. The modeling system was applied to the 25,139 ha Broughton’s Creek watershed in western Manitoba in Canada. As a representative prairie watershed, the Broughton’s Creek watershed experienced historic wetland losses from 2,998 ha in 1968 to 2,379 ha in 2005. Modeling results showed that if wetlands in the Broughton’s Creek watershed can be restored to the 1968 level, the peak discharge and average sediment loading can be reduced by 23.4 and 16.9%, respectively at the watershed outlet. Based on wetland and stream drainage areas estimated by the model and empirical nutrient export coefficients, the corresponding water quality benefits in terms of reductions in total phosphorus and nitrogen loadings were estimated at 23.4%. The modeling results are helpful for designing effective watershed restoration strategies in the Broughton’s Creek watershed. The developed methodology can be also applied to other study areas for examining the environmental effects of wetland restoration scenarios.     

Absence of the RGS9.Gbeta5 GTPase-activating complex in photoreceptors of the R9AP knockout mouse

Timely termination of the light response in retinal photoreceptors requires rapid inactivation of the G protein transducin. This is achieved through the stimulation of transducin GTPase activity by the complex of the ninth member of the regulator of G protein signaling protein family (RGS9) with type 5 G protein beta subunit (Gbeta5). RGS9.Gbeta5 is anchored to photoreceptor disc membranes by the transmembrane protein, R9AP. In this study, we analyzed visual signaling in the rods of R9AP knockout mice. We found that light responses from R9AP knockout rods were very slow to recover and were indistinguishable from those of RGS9 or Gbeta5 knockout rods. This effect was a consequence of the complete absence of any detectable RGS9 from the retinas of R9AP knockout mice. On the other hand, the level of RGS9 mRNA was not affected by the knockout. These data indicate that in photoreceptors R9AP determines the stability of the RGS9.Gbeta5 complex, and therefore all three proteins, RGS9, Gbeta5 , and R9AP, are obligate members of the regulatory complex that speeds the rate at which transducin hydrolyzes GTP.     

Innate and Learned Predator Recognition Mediated by Chemical Signals in Eurycea nana

Effective and efficient predator recognition and avoidance are essential for the persistence of prey populations, especially in habitats where non-native predators have been introduced. Predator recognition studies are commonly couched within a learned or innate dichotomous framework; however, characteristics of some systems or species could favor innate recognition combined with the ability to alter avoidance responses based on experience with predators. Eurycea nana is a fully aquatic salamander inhabiting a system with a diverse, yet temporally stable, community of native and non-native opportunistically foraging fish predators. To examine predator recognition, we examined avoidance responses (decreased activity) of predator-naïve (first-generation, captive-reared) and predator-experienced (recently collected) E. nana to the chemical cues of a native predator, a non-native predator, a non-predator, and a blank control. Both predator-naïve and predator-experienced E. nana significantly lowered activity in response to the native fish predator when compared with a blank control. Interestingly, predator-naïve E. nana decreased activity in response to the non-native fish predator while predator-experienced E. nana did not. These results indicate that while there is an innate component to predator recognition in E. nana , experience and risk assessment may also be important.     

The effect of oxidants on biomembranes and cellular metabolism

During the reductive process in the tissues, the aerobes generate a number of oxidants. Unless these oxidants are reduced, oxidative damage and cell death would occur. Oxidation of plasma membrane lipids leads to autocatalytic chain reactions which eventually alter the permeability of the cell. The role of oxidative damage in the pathophysiology of diabetic complications and ischemic reperfusion injury of myocardium, especially the changes in the channel activity which may lead to arrhythmia have been studied. Hyperglycemia activates aldose reductase which could efficiently reduce glucose to sorbitol in the presence of NADPH. Since NADPH is also aldose required by glutathione reductase for reducing oxidants, its diversion would lead to membrane lipid oxidation and permeability changes which are probably responsible for diabetic complications such as cataractogenesis, retinopathy, neuropathy etc. Antioxidants such as butylated hydroxy toluene (BHT) and also reductase inhibitors prevent or delay some of these complications. By using patch-clamp technique in isolated frog myocytes, we have shown that hydroxy radicals generated by ferrous sulfate and ascorbate as well as lipid peroxides such as t-butyl hydroperoxide facilitate the entry of Na⁺ by oxidizing Na⁺-channels. Increased intracellular Na⁺ leads to an increase in Na⁺/Ca²⁺ exchange. The increased Na⁺ concentration by itself may produce electrical disturbance which would result in arrhythmia. Increased Ca²⁺ may affect proteases and may help in the conversion of xanthine dehydrogenase to xanthine oxidase, consequently increased production of super oxide radicals. Increased membrane lipid peroxidation and other oxygen free-radical associated membrane damage in myocytes has been demonstrated.     

取食转基因抗虫棉上的棉蚜对粉舞蛛存活和发育的影响

本文以转双价基因棉花SGK321、棉蚜Aphis gossypii和粉舞蛛Alopecosa pulverulenta为对象,研究了捕食转基因植物上的植食性害虫对多食性捕食性天敌的影响。结果表明,粉舞蛛可以猎食棉蚜,但单独捕食棉蚜不足以长期维持若蛛的生存和发育; 与果蝇混合饲养,能显著提高若蛛存活率和体重。在猎物过量或数量不足的情况下,单独捕食转基因棉或常规棉上的棉蚜,若蛛的生存曲线和体重差异不显著。在猎物过量的条件下,用转基因棉上的棉蚜与果蝇混合饲养,若蛛的存活率显著高于用常规棉上的棉蚜与果蝇混合的处理; 但这两种处理下,若蛛的体重差异不显著。在猎物数量不足的情况下,用转基因棉或常规棉上的棉蚜与果蝇混合饲养,若蛛的存活率和体重差异都不显著。可见,转双价基因棉花SGK321上的棉蚜对粉舞蛛的存活和发育没有显著的不利影响。