Genetic diversity and population structure of Pichia guilliermondii over 400 generations of experimental microevolution

An in vitro evolution model was used to study changes in the genetic diversity of 24 strains of Pichia guilliermondii isolated from the midgut of bark beetles of the genus Dendroctonus . The genetic diversity of P. guilliermondii strains over 400 generations was analysed using multilocus enzyme electrophoresis (MLEE) and random amplified polymorphic DNA polymerase chain reaction (RAPD-PCR) markers. Resemblance relationships among strains were observed by cluster analysis. From the MLEE and RAPD markers, it was shown that the effective number of alleles, polymorphism and expected heterozygosity varied over the generations. The average heterozygosity among generations was statistically significant. Both the genetic diversity and the average heterozygosity were statistically significant among generations. The reduction in the population size from 10⁹ to 10⁵ yeast mL⁻¹ associated with each transfer in P. guilliermondii strains and the clonal population structure observed along 400 generations suggest that genetic diversity changes and the observed replacement of genotypes are a consequence of a genetic drift process and not of the reproductive mode.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 475–486.     

The diversification of Nearctic mammals in the Mexican transition zone

The boundary between the Nearctic and Neotropical regions has been delineated using different approaches, methods and taxa. Using a panbiogeographical approach, identification of nodes can help understand the dynamics and evolution of the boundary. We analysed the distribution patterns of 46 Mexican land mammal species belonging to the Nearctic biotic component and delineated generalized tracks and nodes, in order to determine the southernmost boundary of the Nearctic region in Mexico. We found six generalized tracks and nine nodes; the latter located largely in the Sierra Madre Oriental, Transmexican Volcanic Belt, Sierra Madre del Sur and Chiapas biogeographical provinces. The highlands of Chiapas were found to represent the southernmost area inhabited by Nearctic taxa. The other biogeographical provinces, together with the Sierra Madre Occidental and Balsas Basin provinces, represent the Mexican transition zone in the strict sense. Instead of a classic static boundary, this transition zone represents an evolutionarily 'active' zone, where several speciation events have taken place in the past.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 327–339.     

Humoral Recognition Factors in the Arthropoda. The Specificity of Chelicerata Serum Lectins

Arthropods have the capacity of recognizing self from non-selfin various defense phenomena including hemolymph clotting, phagocytosis,encapsulation, melanization and clearance of the foreign matterwhich must be initiated by a first step of molecular recognition."Natural" and experimentally induced humoral factors have beendescribed which act as hemagglutinins, bacterial agglutinins,precipitins, bactericidal factors, bacteriolysins, hemolysins,opsonins, clotting factors, and lysozymes. Their exact rolein recognition functions has not been fully explored and theirfunction remains unclear. Among these factors, the carbohydrate-bindingmolecules (lectins) are the best characterized in their specificity,physicochemical properties and molecular structure. Arthropodlectins are multimeric, high molecular weight protein (glycoprotein)molecules with a certain degree of heterogeneity in their specificityand structure. In particular, serum lectins from chelicerates(horseshoe crabs, scorpions and spiders) share a common property:the specificity for sialic acids. Arachnids and merostomes divergedin the earliest Cambrian. Since they occupy markedly differenthabitats, the sialic acid specific lectins most probably area relict rather than an adaptative character. In addition tothis common feature of specificity, lectins from cheliceratesand other arthropods represent heterogeneous populations whichcan bind a wide variety of carbohydrates, many of them presenton bacteria as D-galactose, 2-keto-3-deoxyoctonate, glucuronicacid, N-acetylmuramic acid, and colominic acid. Multiplicityin specificity suggests that serum lectins might contributeas a carbohydrate-based recognition system for the non-self.The requirement for avoiding self recognition would be thatcarbohydrate structures potentially recognized by the systemwould be absent, masked or out of reach of this humoral factoror cell associated recognition factors.     

Phylogenetic analysis of Chloraeinae (Orchidaceae) based on plastid and nuclear DNA sequences

The phylogenetic relationships of subtribe Chloraeinae, a group of terrestrial orchids endemic to southern South America, have not been satisfactorily investigated. A previous molecular phylogenetic analysis based on plastid DNA supported the monophyly of Chloraeinae and Gavilea, but showed that Chloraea is non‐monophyletic and that the sole species of Bipinnula analysed is sister to Geoblasta. However, that analysis included only 18 of the 73 species belonging to this subtribe. Here, the phylogenetic relationships of Chloraeinae were assessed by analysing aproximately 7500 bp of nucleotide sequences from nuclear ribosomal internal transcribed spacer (ITS) and plastid DNA (rbcL, matK, trnL‐trnF, rpoB‐trnC) for 42 species representing all four currently accepted genera of Chloraeinae and appropriate outgroups. Nuclear and plastid data were analysed separately and in combination using two different methods, namely parsimony and Bayesian inference. Our analyses support the monophyly of Chloraeinae and their inclusion in an expanded concept of Cranichideae, but none of the genera of Chloraeinae that includes more than one species is monophyletic. Gavilea and Bipinnula are paraphyletic, with Chloraea chica nested in Gavilea and Geoblasta penicillata in Bipinnula. As currently delimited, Chloraea is polyphyletic. The taxonomic changes proposed recently are for the most part not justifiable on phylogenetic grounds, except for recognition of the monotypic genus Correorchis. The lack of resolution for the relationships among species of ‘core’Chloraea suggests a relatively recent diversification of this group. The current generic classification is in need or revision, but additional study is advisable before carrying out further taxonomic changes. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 168 , 258–277.     

Gut-associated yeast in bark beetles of the genus Dendroctonus Erichson (Coleoptera: Curculionidae: Scolytinae)

Scolytine bark beetles are the most destructive pests of conifers; they sometimes aggregate in such large numbers that they actually kill their hosts. They maintain close relationships with yeasts and fungi, in particular those that are assumed to aid in digestive, detoxification processes and pheromone production. In this study, 403 yeast strains were isolated from the guts, ovaries, eggs and frass of nine bark beetle species in the genus Dendroctonus Erichson. The beetles were collected from 10 conifer species at 34 locations in Mexico, Guatemala and the USA. Yeast identification was based on partial DNA sequences from 18S rDNA, 26S rDNA and internal transcribed spacer (ITS1), as well as morphological and physiological characteristics. A combined phylogenetic analysis delimited 11 clades with sequences similar to Candida arabinofermentans , C. ernobii , C. membranifaciens (including C. lessepsii , Pichia mexicana and P. scolyti ), C. oregonensis , C. piceae , Kuraishia capsulata (including K. capsulata and K. cf. molischiana ), Pichia americana , P. canadensis , P. glucozyma , P. guilliermondii and an undescribed species of Candida . Nucleotide divergences between the major clades were at least 5% while, with the exception of 30 isolates, yeasts within clades differed from named reference species at fewer than 1% of the nucleotide sites. There do not appear to be obligate relationships between particular yeasts and specific anatomical partitions, nor between particular yeasts and bark beetle species. Some yeasts do appear to be preferentially associated with bark beetles feeding on different conifer genera and therefore host plant defences may limit yeast community diversity in Dendroctonus .  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 325–342.     

Historical biogeography of the Andean region: evidence from Listroderina (Coleoptera: Curculionidae: Rhytirrhinini) in the context of the South American geobiotic scenario

The weevil subtribe Listroderina belongs in the tribe Rhytirrhinini (subfamily Cyclominae), and has 25 genera and 300 species in the Americas. The distributional history of this subtribe was reconstructed applying dispersal-vicariance analysis (DIVA) using its genera as terminals. The results suggest that Listroderina originated within an area presently represented by the Central Chile, Paramo, Puna, Patagonia and Subantarctic subregions of the Andean region. Posteriorly, the subtribe was affected by extinctions and was confined to Central Chile, Paramo and Subantarctic subregions. Later, extinctions and dispersals took place and the subtribe was restricted to the Paramo and Puna subregions. From there, a dispersal event to the Subantarctic subregion occurred, enlarging again the geographical range of the subtribe. Subsequently, a vicariant event separated the Puna and Paramo subregions from the Subantarctic one. While the Macrostyphlus generic group was confined to the Paramo and Puna subregions and from there dispersed to other areas, the Antarctobius , Falklandius , Listronotus , and Listroderes generic groups diversified in the Subantarctic subregion. The results obtained by DIVA may be linked to major geological events of South America. Thus, the geobiotic scenarios recorded in this subcontinent since the late Cretaceous could be used to interpret the biogeographical events which drove Listroderina evolution.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 80 , 339–352.     

Patterns of oviposition by Sandia xami (Lepidoptera, Lycaenidae) in relation to food plant apparency

ABSTRACT.

• 1 The butterfly Sandia xami (Reakirt) has a very clumped yearly pattern of oviposition on its food plant Echeveria gibbiflora D.C., and the mean number of eggs per plant is always very low.
• 2 Three features of host plants are highly associated with the probability of being oviposited upon: height of plant; degree of conspicuousness; and degree of isolation from conspecific plants.
• 3 The relative importance of these factors as predictors of the probability of oviposition change according to the time scale considered: height and conspicuousness are more important over short (weekly) time intervals whilst isolation takes precedence over longer (yearly) periods.
• 4 It is hypothesized that the clumped pattern of oviposition is responsible for the low numbers of the butterflies relative to their very abundant food plant.

     

Acquisition and allocation of resources in two waterlogging-tolerant grasses

This study focuses on the following questions: (i) whether reductions in root:shoot ratio have a cost in terms of nutrient balance of the plant, and (ii) whether changes in resource-allocation patterns are proportional among different resources. Our approach was to analyse the variations in the allocation pattern induced by soil waterlogging. A pot experiment was conducted to analyse the effects of waterlogging on biomass, phosphorus (P) and nitrogen (N) accumulation of Paspalum dilatatum and Danthonia montevidensis , two waterlogging-tolerant grasses. When changing from oxic to anoxic conditions, a common response of these and other waterlogging-tolerant grasses is a reduction in allocation to below-ground resources. It was observed that (i) the reduction in root:shoot ratio caused by waterlogging did not have a cost in terms of capacity for nutrient uptake; (ii) resource partitioning within aerial parts was less sensitive to treatments than partitioning between roots and shoots; and (iii) biomass does not appear to be a useful currency for evaluating nutrient-allocation patterns, as the allocation of P and N was inadequately represented by biomass. The results presented here indicate that the existence of compensation mechanisms reduces the predictive value of the partition of resources for the capacity of plants to acquire resources. Data on the allocation of nutrients in relation to biomass suggest that the assumptions of independence in the allocation pattern between biomass and limiting nutrients under the effects of environmental factors can be extended.