The complete chloroplast genome and characteristics analysis of Callistemon rigidus R.Br.

Callistemon rigidus R.Br. one of the traditional Chinese medicinal plants, is acrid-flavored and mild-natured, with the prominent effects reducing swelling, resolving phlegm, and dispelling rheumatism. Clinically, it has been commonly used to treat cold, cough and asthma, pain and swelling from impact injuries, eczema, rheumatic arthralgia. The chloroplast genome study on Callistemon rigidus R.Br. is a few seen. This study demonstrates the data collected from the assembly and annotation of the chloroplast (cp) genome of Callistemon rigidus R.Br., followed by furthers comparative analysis with the cp genomes of closely related species. C. rigidus R.Br. showed a cp genome in the size of 158, 961 bp long with 36.78% GC content, among which a pair of inverted repeats (IRs) of 26, 671 bp separated a large single-copy (LSC) region of 87, 162 bp and a small single-copy (SSC) region of 18, 457 bp. Altogether 131 genes were hosted, including 37 transfer RNAs, 8 ribosomal RNAs, and 86 protein-coding genes. 284 simple sequence repeats (SSRs) were also marked out. A comparative analysis of the genome structure and the sequence data of closely related species unveiled the conserved gene order in the IR and LSC/SSC regions, a quite constructive finding for future phylogenetic research. Overall, this study providing C. rigidus R.Br. genomic resources could positively contribute to the evolutionary study and the phylogenetic reconstruction of Myrtaceae.

     

The complete chloroplast genome and characteristics analysis of Musa basjoo Siebold

Background

An ornamental plant often seen in gardens and farmhouses, Musa basjoo Siebold can also be used as Chinese herbal medicine. Its pseudostem and leaves are diuretic; its root can be decocted together with ginger and licorice to cure gonorrhea and diabetes; the decoct soup of its pseudostem can help relieve heat, and the decoct soup of its dried flower can treat cerebral hemorrhage. There have not been many chloroplast genome studies on M. basjoo Siebold.

Methods and results

We characterized its complete chloroplast genome using Novaseq 6000 sequencing. This paper shows that the length of the chloroplast genome M. basjoo Siebold is 172,322 bp, with 36.45% GC content. M. basjoo Siebold includes a large single-copy region of 90,160 bp, a small single-copy region of 11,668 bp, and a pair of inverted repeats of 35,247 bp. Comparing the genomic structure and sequence data of closely related species, we have revealed the conserved gene order of the IR and LSC/SSC regions, which has provided a very inspiring discovery for future phylogenetic research.

Conclusions

Overall, this study has constructed an evolutionary tree of the genus Musa species with the complete chloroplast genome sequence for the first time. As can be seen, there is no obvious multi-branching in the genus, and M. basjoo Siebold and Musa itinerans are the closest relatives.

     

Vertical Profiles of Soil Water Content as Influenced by Environmental Factors in a Small Catchment on the Hilly-Gully Loess Plateau

Characterization of soil water content (SWC) profiles at catchment scale has profound implications for understanding hydrological processes of the terrestrial water cycle, thereby contributing to sustainable water management and ecological restoration in arid and semi-arid regions. This study described the vertical profiles of SWC at the small catchment scale on the hilly and gully Loess Plateau in Northeast China, and evaluated the influences of selected environmental factors (land-use type, topography and landform) on average SWC within 300 cm depth. Soils were sampled from 101 points across a small catchment before and after the rainy season. Cluster analysis showed that soil profiles with high-level SWC in a stable trend (from top to bottom) were most commonly present in the catchment, especially in the gully related to terrace. Woodland soil profiles had low-level SWC with vertical variations in a descending or stable trend. Most abandoned farmland and grassland soil profiles had medium-level SWC with vertical variations in varying trends. No soil profiles had low-level SWC with vertical variations in an ascending trend. Multi-regression analysis showed that average SWC was significantly affected by land-use type in different soil layers (0–20, 20–160, and 160–300 cm), generally in descending order of terrace, abandoned farmland, grassland, and woodland. There was a significant negative correlation between average SWC and gradient along the whole profile (P<0.05). Landform significantly affected SWC in the surface soil layer (0–20 cm) before the rainy season but throughout the whole profile after the rainy season, with lower levels on the ridge than in the gully. Altitude only strongly affected SWC after the rainy season. The results indicated that land-use type, gradient, landform, and altitude should be considered in spatial SWC estimation and sustainable water management in these small catchments on the Loess Plateau as well as in other complex terrains with similar settings.