Cytosine Methylation Alteration in Natural Populations of Leymus chinensis Induced by Multiple Abiotic Stresses

Background

Human activity has a profound effect on the global environment and caused frequent occurrence of climatic fluctuations. To survive, plants need to adapt to the changing environmental conditions through altering their morphological and physiological traits. One known mechanism for phenotypic innovation to be achieved is environment-induced rapid yet inheritable epigenetic changes. Therefore, the use of molecular techniques to address the epigenetic mechanisms underpinning stress adaptation in plants is an important and challenging topic in biological research. In this study, we investigated the impact of warming, nitrogen (N) addition, and warming+nitrogen (N) addition stresses on the cytosine methylation status of Leymus chinensis Tzvel. at the population level by using the amplified fragment length polymorphism (AFLP), methylation-sensitive amplified polymorphism (MSAP) and retrotransposon based sequence-specific amplification polymorphism (SSAP) techniques.

Methodology/Principal Findings

Our results showed that, although the percentages of cytosine methylation changes in SSAP are significantly higher than those in MSAP, all the treatment groups showed similar alteration patterns of hypermethylation and hypomethylation. It meant that the abiotic stresses have induced the alterations in cytosine methylation patterns, and the levels of cytosine methylation changes around the transposable element are higher than the other genomic regions. In addition, the identification and analysis of differentially methylated loci (DML) indicated that the abiotic stresses have also caused targeted methylation changes at specific loci and these DML might have contributed to the capability of plants in adaptation to the abiotic stresses.

Conclusions/Significance

Our results demonstrated that abiotic stresses related to global warming and nitrogen deposition readily evoke alterations of cytosine methylation, and which may provide a molecular basis for rapid adaptation by the affected plant populations to the changed environments.     

西南高山地区净生态系统生产力时空动态

西南高山地区生态系统类型丰富、地形复杂,是响应全球气候变化的重点区域,对全球气候变化具有重要的指示作用.应用生态系统模型(Carbon Exchange between Vegetation,Soil,and the Atmosphere,CEVSA)模型估算了1954-2010年西南高山地区净生态系统生产力(NEP)的时空变化,分析了其对气候变化的响应.结果表明:(1)1954-2010年西南高山地区NEP平均为29.7gC·m-2·a-1,其中低海拔地区常绿针叶林和常绿阔叶林NEP较高,而高海拔地区的草地覆盖类型NEP较低.(2)西南高山地区NEP总量的变动范围为-8.36-29.4Tg C/a,平均每年吸收碳15.4Tg C;NEP年际下降趋势显著(P＜0.05),平均每年减少0.187Tg C,下降显著的区域占研究地区总面积的35.2％ (P＜0.05),其中草地(-0.526 g C·m-2·a-2,P＜0.01)和常绿针叶林(-0.691g C·m-2·a-2,P＜0.01)下降趋势极为显著.(3)年NEP总量的年际变化与年平均温度呈负相关(r=-0.454,P＜0.01),与年降水量呈正相关(r=0.708,P＜0.01),与温度显著负相关的区域占60.3％ (P＜0.05),与降水显著正相关的区域占52.1％(P＜0.05),其中草地和常绿针叶林均与温度极显著负相关(r=-0.603,P＜0.01;r=-0.485,P＜0.01),而与降水量极显著正相关(r=0.554,P＜0.01; r=0.749,P＜0.01).(4)西南高山地区是明显的碳汇区,但是由于土壤异养呼吸(HR,heterotrophic respiration)的增长速度大于净初级生产力(NPP,net primary production)的增长速度,最近20a有部分地区开始由碳汇转为碳源.     

Production of 2,3-Butanediol from Sucrose by a <Emphasis Type="Italic">Klebsiella</Emphasis> Species

Chemical 2,3-butanediol is an important platform compound possessing diverse industrial applications. So far, it is mainly produced by using petrochemical feedstock which is associated with high cost and adverse environmental impacts. Hence, finding alternative routes (e.g., via fermentation using renewable carbon sources) to produce 2,3-butanediol are urgently needed. In this study, we report a wild-type Klebsiella sp. strain XRM21, which is capable of producing 2,3-butanediol from a wide variety of carbon sources including glucose, sucrose, xylose, and glycerol. Among them, fermentation of sucrose leads to the highest production of 2,3-butanediol. To maximize the production of 2,3-butanediol, fermentation conditions were first optimized for strain XMR21 by using response surface methodology (RSM) in batch reactors. Subsequently, a fed-batch fermentation strategy was designed based on the optimized parameters, where 91.2 g/L of 2,3-butanediol could be produced from substrate sucrose dosing in 100 g/L for three times. Moreover, random mutagenesis of stain XMR21 resulted in a highly productive mutant strain, capable of producing 119.4 and 22.5 g/L of 2,3-butanediol and ethanol under optimized fed-batch fermentation process within 65 h with a total productivity of 2.18 g/L/h, which is comparable to the reported highest 2,3-butanediol concentration produced by previous strains. This study provides a potential strategy to produce industrially important 2,3-butanediol from low-cost sucrose.     

The metabolic pathway of metamifop degradation by consortium ME-1 and its bacterial community structure

Metamifop is universally used in agriculture as a post-emergence aryloxyphenoxy propionate herbicide (AOPP), however its microbial degradation mechanism remains unclear. Consortium ME-1 isolated from AOPP-contaminated soil can degrade metamifop completely after 6 days and utilize it as the carbon source for bacterial growth. Meanwhile, consortium ME-1 possessed the ability to degrade metamifop stably under a wide range of pH (6.0–10.0) or temperature (20–42 °C). HPLC–MS analysis shows that N-(2-fluorophenyl)-2-(4-hydroxyphenoxy)-N-methyl propionamide, 2-(4-hydroxyphenoxy)-propionic acid, 6-chloro-2-benzoxazolinone and N-methyl-2-fluoroaniline, were detected and identified as four intermediate metabolites. Based on the metabolites identified, a putative metabolic pathway of metamifop was proposed for the first time. In addition, the consortium ME-1 was also able to transform or degrade other AOPP such as fenoxaprop-p-ethyl, clodinafop-propargyl, quizalofop-p-ethyl and cyhalofop-butyl. Moreover, the community structure of ME-1 with lower microbial diversity compared with the initial soil sample was investigated by high throughput sequencing. β-Proteobacteria and Sphingobacteria were the largest class with sequence percentages of 46.6% and 27.55% at the class level. In addition, 50 genera were classified in consortium ME-1, of which Methylobacillus, Sphingobacterium, Bordetella and Flavobacterium were the dominant genera with sequence percentages of 25.79, 25.61, 14.68 and 9.55%, respectively.     

Application of plasma lipidomics in studying the response of patients with essential hypertension to antihypertensive drug therapy

Hypertension is a key risk factor in the progression of cardiovascular disease (CVD). Dyslipidemia, a strong predictor of CVD, frequently coexists with hypertension. Therefore, the control of hypertension and dyslipidemia may help reduce CVD morbidity and mortality. In the present study, the therapeutic effects of antihypertensive agents on blood pressure control and plasma lipid metabolism were evaluated. The plasma lipid profiles of patients with treated (n = 25) or untreated (n = 30) essential hypertension as well as of subjects with normotension (n = 28) were analyzed using liquid chromatography mass spectrometry. Principal component analysis of the lipidomics data revealed distinct clusters among studied subjects across three human populations. Phosphatidylcholines and triacylglycerols (TG) dominated the pattern of hypertension-influenced plasma lipid metabolism. Discriminatory lipid metabolites were analyzed using one-way analysis of variance followed by a post hoc multiple comparison correction. TG lipid class was significantly increased by 49.0% (p < 0.001) in hypertensive vs. normotensive groups while tended to decrease (-21.2%, p = 0.054) in hypertensive patients after treatment. Total cholesteryl esters were significantly decreased by -16.9% (p < 0.001) in hypertensive patients after treatment. In particular, a large number of individual neutral lipid species were significantly elevated in hypertensive subjects but significantly decreased after treatment with antihypertensive agents. The present study applied, for the first time, a systems biology based lipidomics approach to investigate differentiation among plasma lipid metabolism of patients with treated/untreated essential hypertension and subjects with normotension. Our results demonstrate that antihypertensive medications to lower blood pressure of hypertensive patients to target levels produced moderate plasma lipid metabolism improvement of patients with hypertension.     

中国西南喀斯特地区植被变化时空特征及其成因

2000年以来,国家在中国西南喀斯特地区开展一系列生态治理工程,该地区退化生态系统得到一定程度的恢复,而2008年开展石漠化综合治理工程以来该地区的植被覆盖和生产力如何变化尚不清楚。本研究利用遥感增强型植被指数(EVI)和总初级生产力(GPP)数据,研究2000—2015年西南喀斯特地区植被EVI年均值和GPP年总量的时空变化特征,重点探讨2008年以来石漠化综合治理工程、气候变化等因素对植被覆盖及生长的影响,进而评估石漠化综合治理工程的成效。结果表明,2000—2015年西南喀斯特地区植被EVI总体显著增加,其中2008—2015年植被EVI均值和变化率分别比2000—2007年高6.9%和85.7%,EVI显著增加的区域占西南喀斯特地区的13.4%;该区域GPP年总量亦呈显著增加趋势(20.58 g C m-2a-1)。2008—2015年气温和降水对植被EVI变化趋势的贡献仅占28.3%,退耕还林还草等生态恢复措施、大气CO2浓度、大气氮沉降的增加可能是该区域植被覆盖显著增加的主要贡献因子。在100个首批石漠化综合治理试点县中,大部分试点县植被EVI的变化趋势受非气候因子的影响,其中治理面积大的县受非气候因子的影响显著高于治理面积小的县,表明石漠化综合治理工程的实施有效地促进了试点县植被覆盖的增加。     

The interplay between hMLH1 and hMRE11: role in MMR and the effect of hMLH1 mutations

Our previous studies indicate that hMRE11 plays a role in MMR, and this function of hMRE11 is most likely mediated by the hMLH1-hMRE11 interaction. Here, we explored the functional implications of the hMLH1-hMRE11 interaction in MMR and the effects of hMLH1 mutations on their interaction. Our in vitro MMR assay demonstrated that the dominant-negative hMRE11^452-634 mutant peptide (i.e., harboring only the hMLH1-interacting domain) imparted a significant reduction in both 3′ excision and 3′-directed MMR activities. Furthermore, the expression of hMRE11^452-634, and to a lesser extent hMRE11^1-634 (ATLD1), impaired G2/M checkpoint control in response to MNU and cisplatin treatments, rendering cells resistant to killings by these two anticancer drugs. Analysis of 38 hMLH1 missense mutations showed that the majority of mutations caused significant (>50%) reductions in their interaction with hMRE11, suggesting a potential link between aberrant protein interaction and the pathogenic effects of hMLH1 variants.     

Modeling the effects of nitrogen deposition on carbon budget in two temperate forests

The NO_x input terrestrial ecosystems are increasing significantly induced by human activities, yet the understanding of the responses of carbon cycle to nitrogen deposition is still poor. The northern temperate forest ecosystems have seen the greatest changes in nitrogen inputs from atmosphere. It is necessary for us to understand how the carbon cycle would change under the nitrogen addition in temperate forests, as an important carbon sink. In this study, we present a biogeochemical process model, CEVSA2, and use this model to elucidate the key processes that may strongly influence the carbon budget response to anthropogenic nitrogen addition. The CEVSA2 model has included the effect of nitrogen on photosynthesis, carbon allocation, soil organic matter decomposition, etc. Our simulations show nitrogen addition stimulates the photosynthesis, net carbon sequestration, carbon accumulation in vegetation and soil, by contrary, the low level of nitrogen addition decreases the heterotrophical and total respiration. The long-term chronic nitrogen addition experiments show that the low and high level nitrogen addition would reduce the carbon sequestration and accumulation. The model failed to simulate the effect of nitrogen addition on plant mortality, the de-coupling of nitrogen and photosynthesis when nitrogen saturates. In addition, the responses of soil respiration to nitrogen deposition involve so many complex biochemical processes; however, we have little knowledge about them. Sequentially, there is large uncertainty of model simulation on the effect of nitrogen deposition on soil respiration. With increasing rates of anthropogenic nitrogen deposition, there is a strong need to understand links between nitrogen inputs and carbon cycle.     

新克痛宁术后镇痛效果观察

目的了解眼镜蛇毒制剂新克痛宁对术后镇痛效果。方法对７２例胫腓骨折病人,在连续硬膜外阻滞麻醉下行切开复位内固定术,术后随机分为４组（每组１８例）向硬膜外腔注药：Ａ组新克痛宁０．２５ＩＵ／ｋｇ;Ｂ组新克痛宁０．１２５ＩＵ／ｋｇ加０．５％利多卡因液１０ｍｌ;Ｃ组吗啡２ｍｇ;Ｄ组吗啡１ｍｇ加０．５％利多卡因液１０ｍｌ。结果镇痛持续时间Ａ、Ｂ组明显延长,Ａ与Ｂ组分别为（４１２±２８）ｍｉｎ,与Ｃ、Ｄ组比较差异显著（Ｐ＜０．０５）。注药后３０～１２０ｍｉｎ,患肢足背皮肤温度,Ａ、Ｂ组亦高于Ｃ、Ｄ组（Ｐ＜０．０５）,且无不良反应。结论新克痛宁术后镇痛效果比吗啡好。