Characterization of microsatellite loci for the detection of temporal genetic shifts within a single cohort of the brown demoiselle,Neopomacentrus filamentosus

Neopomacentrus filamentosus, a common damselfish on the Indo–Australian archipelago, undergoes significant shifts in size and mitochondrial genetic structure upon larval settlement and metamorphosis to juvenile stages. We characterized five polymorphic microsatellite loci in order to study temporal genetic shifts within a single generation of N. filamentosus sampled first as larval settlers then again as demersal juvenile recruits. All loci were extremely polymorphic and exhibited high levels of heterozygosity. While all loci from the larval samples conformed to Hardy – Weinberg expectations, significant heterozygote deficiencies were seen in two loci in the juvenile samples, likely due to extreme size‐selective mortality imposed post‐settlement.     

XENOPUS LAEVIS AND DEVELOPMENTAL BIOLOGY

1. Because of the present popularity of Xenopus laevis for research in developmental biology, a review of the literature on this animal has been undertaken which emphasizes the anatomical, physiological and developmental features in which it differs from other anuran Amphibia. The need for caution in generalizing from observations on Xenopus to other vertebrates is stressed. 2. Earlier literature and the use of Xenopus for pregnancy testing have been surveyed briefly. Some of the peculiarities of this genus are: the prevalence of pulmonary rather than cutaneous or branchial respiration in the larva, with concomitant modifications of the vascular system; the larval filter-feeding mechanism; the unusual development of the forelimbs, outside the gill chamber; and a number of features of musculature and skeleton in the adult which may be regarded either as primitive or as neotenous, or as specializations for aquatic life. Urodele-like features of the morphology of the pituitary and pineal glands are also mentioned. 3. Recent work on the germ cells and their origin in Xenopus is reviewed in Section III. The germ plasm has been traced from early cleavage stages into germ cells whose identity and genetic characteristics may be traced by reciprocal transplants between anucleolate and normal Xenopus. This plasm is thought to contain redundant copies of DNA from the maternal oocyte, which may thus get passed on to the next generation. During oogenesis, yolk proteins originate from maternal liver protein, and both yolk platelets and pigment granules appear to form in association with mitochondria. The yolk platelets evidently contain both DNA and RNA, and the mitochondria also contain both DNA, of a circular form, and ribosomal RNA. In the oocyte nucleus, special interest has been focused recently on the extrachromo-somal DNA which arises from the nucleolar organizer regions of chromosomes. This DNA later forms the cores of the nucleoli. A number of synthetic processes can take place in the oocyte cytoplasm in the absence of the nucleus, and in the presence of foreign messenger-RNA. Ribosomal RNA synthesis shows at first an excess of 5 s over 18 s and 28 s forms. 4. Spermatogenesis has been studied little in Xenopus. Two unusual features are the absence of seminal vesicles for sperm storage and the spiral shape of the sperm head. By techniques involving destruction of the female pronucleus with ultraviolet light, or suppression of polar-body formation, androgenetic haploids, as well as triploids and tetraploids, have been produced in this species. Paternal genes begin to act at the onset of gastrulation, when nucleoli appear and major rRNA synthesis begins. This situation is sometimes presumed to typify events in all Amphibia -perhaps all vertebrates - but the assumption is unjustified, since in mammals there is much variation in the time of onset of rRNA synthesis, from the evidence so far available. 5. During cleavage in Xenopus, which appears to follow the same pattern as in other Amphibia, septate junctions may serve as channels of communication between the cells. Cytoplasmic DNA is a source for the nuclear DNA synthesis, and the total DNA per cell decreases. As shown by nuclear transplantation experiments, cleavage nuclei, like those of later embryonic stages, remain capable of initiating development in an enucleated egg. Egg cytoplasm can also initiate DNA and RNA synthesis in adult nuclei. 6. Gastrulation in Xenopus is unusual in that the mesoderm migrates forward below the surface and the dorsal lip is lined superficially by endoderm. Neural inductors have been extracted from the dorsal lip of Xenopus, but have not been analysed biochemically. By the end of gastrulation the induced ectoderm is synthesizing high-molecular-weight RNA and also shows increased quantities of three antigenic proteins. 7. In the early processes of differentiation of tissue primordia, regional differences in rates of yolk breakdown, proteolysis, amino-acid activation, tRNA characteristics and rates of incorporation of individual amino acids into protein may be demonstrated. There are also differences in antigens and in isoenzyme patterns. One peculiar morphological feature of early tissue development is the rotatory mode of somite-formation, not so far seem in any other vertebrate. 8. Among several organs whose development has been studied in some detail in Xenopus are: the granular skin glands, which arise from clones of cells; the lateral-line organs, which persist in the adult and are controlled by sensory and motor nerves; and the epidermal cells, which transmit electrical discharges, probably through their zonulae occludentes. In connexion with the filter feeding, the gut is ciliated in the larva: so also are the pronephric ducts. The growth of the pronephros appears to be controlled by a tissue-specific ‘chalone’. 9. The development of the eye in Xenopus normally entails induction of the lens by the eye-cup, as in other vertebrates, but independent ‘free lenses’ may form, by aggregation of epidermal cells instead of invagination from a placode, when the eye-cup rudiment is removed. In the development of the retina there is little evidence of the large-scale cell death described in other vertebrates. Topographical relations between retina and tectum appear to be established long before the full complement of cells is present in either organ. This and other recent experimental evidence suggests that there are no specific point-to-point retinotectal connexions. 10. Studies of the development of motor and sensory elements in the spinal cord of Xenopus showed that there were some early sensory cells lying dorsomedially, and also that the proximal regions of the motor roots were orientated longitudinally: both features are unique to Xenopus. As in Urodela, ablation of the limb causes reduction in size of the lumbar motor horns: in Xenopus it has been shown that there is also increased cell death in the sensory ganglia. 11. Like other Amphibia, Xenopus can regenerate central nervous system, limbs and the lens of the eye. Limb regeneration is somewhat better than in other Anura but gradually declines with increasing age after metamorphosis and also with increasingly proximal levels of amputation. The lens may regenerate from the cornea, the neural retina or the iris, and the regenerates soon acquire lens antigens. 12. Events at metamorphosis in Xenopus are controlled by interactions between the anterior pituitary and the thyroid, as in other Amphibia: cells secreting thyroid-stimulating hormone and thyroid-releasing factor have been identified in the anterior lobe. In response to thyroxine, the isolated tail regresses in organ culture, and this regression is accompanied by increases in the activities of lytic enzymes. 13. Some physiological features of metamorphosis peculiar to Xenopus are: the continued increase in serum proteins for some time afterwards; the more gradual changes in haemoglobin than in other Anura; and the continued excretion of more ammonia than urea. Under conditions of dehydration, however, carbamyl phosphatase activity in the liver increases and a higher proportion of urea is produced. 14. It is concluded that the preferential use of Xenopus for research in developmental biology since the 1950s has led to some important advances in knowledge, but that there is now a need to use other species in order to find out to what extent the same mechanisms operate in them as in Xenopus.     

Characterization of tetranucleotide microsatellite loci and development and validation of multiplex reactions for the study of right whale species (genus Eubalaena)

A North Atlantic right whale (Eubalaena glacialis) genomic library was developed and screened with a (GATA)₈ probe to identify tetranucleotide microsatellite loci. Sixteen characterized loci were polymorphic in North Atlantic and/or South Atlantic (Eubalaena australis) right whales, 12 being polymorphic in E. glacialis, and 15 in E. australis. Fourteen of these were combined with 21 other previously identified loci for a suite of 35 loci which can be used to increase resolution of genetic analyses of these species. Multiplex reactions were developed for genotyping samples at these loci, providing a method that is rapid, reliable and cost‐effective.     

A Multi-Unit Sampling System and Its Use in the Characterization of Ultradian and Infradian Growth in Tetrahymena*

SYNOPSIS. A multi-unit automatic sampling device for investigation of microbial growth under a wide variety of conditions is described. The kinetics of asynchronous population growth for batch cultures of Tetrahymena pyriformis (W) at several temperatures show that there are 2 distinct growth phases: an exponential ultradian growth phase that is strongly temperature dependent and a non-stationary growth phase, the infradian phase, that shows little or no temperature dependence over the range from 15–27 C.     

Mineralization of soil nitrogen in three forest communities from the New England region of New South Wales

Nitrogen (N) mineralization rates and the temperature response patterns of mineral N production in surface (0–7.6 cm) soils were compared in laboratory incubation studies based on disturbed, composite samples. Seasonal variation in the field levels of mineral N, and mineralization potential of intact (7.6 × 5.6 cm diameter) soil cores, were also investigated. Ammonification proceeded rapidly in each soil. Nitrification did not occur in grassy forest (GF) soil but was active in both layered forest (LF) and mossy forest (MF) soils, especially the former. Total mineral N production was greatest in MF and least in LF. Ammonification in disturbed samples was maximal at 50°C in all three soils with a secondary peak at 10°C in LF soil. Nitrification in LF and MF soils was most rapid at 25°C. Several species of ammonifying bacteria with different temperature optima were isolated, indicating that the process of ammonification is a composite of the activities of a variety of decomposer microbes. Mean field levels of mineral N and NH₄–N throughout the year were greatest in MF and least in LF. Seasonal fluctuations in NH₄–N were evident, concentrations being universally low in mid-winter (about 1.5 μgg^-1), increasing to a maximum in late summer (about 5 μg g^-1 in LF: 16–18 μg g^-1 in GF and MF). Field levels of NO₃–N were more constant and never more than 5 μg g^-1 in any community. Both total mineralization and ammonification in intact cores were greatest in MF and least in LF while nitrification was greatest in LF and almost negligible in GF, thus confirming the results obtained with disturbed samples. The potential for mineralization was large in mid-winter when the amount of mineral N was very low, and small in late summer when field levels were higher: this is interpreted as indicating that seasonal climatic factors regulate the availability of substrates for decomposers. Spatial variability in field levels of mineral N and mineral N production in the laboratory was evidenced by significant ‘sampling site’ effects in each community: however, at the sampling intensity used, the presence of bark mounds around Eucalyptus saligna trees could not be shown to affect these attributes. The inability of GF soil to nitrify when incubated in the laboratory could not be ascribed to a high C/N ratio, low pH, lack of substrate ammonium, or a low population of autotrophic nitrifying bacteria. No attempt was made to investigate the presence of allelopathic nitrification inhibitors. No evidence was obtained to support the view that nitrification is atypical of climax communities in situ. The most productive forest (LF) had the greatest capacity to nitrify and the least productive community (GF) the smallest capacity to do so.     

Why are there few algae on snail shells? The effects of grazing,nutrients and shell chemistry on the algae on shells of Helisoma trivolvis

1. Freshwater snails often lack visible growths of algae on their shells. We tested three possible mechanisms that may account for this (grazing, snail-derived nutrients and chemical defences), using the ramshorn snail Helisoma trivolvis .
2. The experiments were carried out in floating plastic enclosures in a pond and comprised seven treatments. Grazing treatments were: a lone snail (ungrazed, as self-grazing does not occur), Helisoma with conspecifics, Helisoma with the co-occurring pond snail Physa sp., empty shells with Helisoma , and ungrazed empty shells. Nutrient effects were possible in all treatments with occupied shells (lone snail; Helisoma with conspecifics, and with Physa ) versus absent in other treatments. Testing for chemical defences compared algae on fresh empty shells, weathered shells (outer organic periostracum layer absent) and boiled fresh shells (with denaturization of susceptible proteins).
3. Diatoms dominated algal assemblages on snail shells. Although the upright diatom Gomphonema gracile was abundant on all shells, it was dominant on the shells of snails housed with other snail grazers (either Helisoma or Physa ).
4. Only the lone snail (nutrients but no grazing) showed higher algal biomass, so presumably any nutrient effect in the treatments with grazers was masked. Both Helisoma and Physa were observed apparently grazing on Helisoma shells, and consequently algal biomass in multi-snail treatments was similar to that on empty shells. Scanning electron microscopy revealed that algal density was highest near the aperture of live snails, but not empty shells; this is consistent with a nutrient addition effect. There was no evidence of chemical defences against algal growth.
5. In soft-bottomed freshwater habitats with abundant snails, shells of living snails provide nutrient-augmented substrata that may indirectly boost overall snail production.     

A novel trophic relationship between cassid gastropods and mysticete whale carcasses

Large cassid gastropods found in close association with Oligocene mysticete whale skeletons in a deep water setting indicate a novel trophic relationship. Bones of early mysticetes are preserved in close association with a recurring assemblage of bivalve taxa that are common components of fossil and recent hydrothermal vent and cold methane seep localities. Living members of these bivalve groups harbor sulfide-oxidizing autotrophic bacteria and comparisons with recent whale-falls indicate that they utilized bone-oil seepage. But unlike recent whale-falls, this fossil invertebrate assemblage is volumetrically dominated by large individuals of the cassid gastropod Liracassis apta that are preserved with their apertures adhering to the bone surfaces. Comparisons with recent cassoidean taxa and their ecological settings suggests that Liracassis apta belongs to the subfamily Oocorythinae, not Cassininae, and was an opportunistic scavenger in deep water, low oxygen environments. Oocorythine gastropods radiated rapidly on the northeastern Pacific margin during the Late Eocene and Oligocene to become the most commonly recorded gastropod in shelf and slope settings.