Weed macaques: The evolutionary implications of macaque feeding ecology

Patterns of feeding ecology among the living macaques conform poorly with recognized phyletic distinctions within the genus because there is an important ecological division which cross-cuts phyletic groupings. This division, between weed species and non-weed species, is based on the differing abilities of macaques to tolerate and even prosper in close association with human settlements. Based on available information about their ecology in the wild, we tentatively assign macaque species to these two categories. Finally, we consider the implications of our argument for scenarios of the initial spread of the macaques.     

Structural organization of the beta-globin locus of B-haplotype sheep

Goats and some sheep synthesize a juvenile hemoglobin, Hb C (alpha 2 beta C2), at birth and produce this hemoglobin exclusively during severe anemia. Sheep that synthesize this juvenile hemoglobin are of the A haplotype. Other sheep, belonging to a separate group, the B haplotype, do not synthesize hemoglobin C and during anemia continue to produce their adult hemoglobin. To understand the basis for this difference we have determined the structural organization of the beta- globin locus of B-type sheep by constructing and isolating overlapping genomic clones. These clones have allowed us to establish the linkage map 5' epsilon I-epsilon II-psi beta I-beta B-epsilon III-epsilon IV- psi beta II-beta F3' in this haplotype. Thus, B sheep lack four genes, including the BC gene, and have only eight genes, compared with the 12 found in the goat globin locus. The goat beta-globin locus is as follows: 5' epsilon I-epsilon II-psi beta X-beta C-epsilon III-epsilon IV-psi beta Z-beta A-epsilon V-epsilon VI-psi beta Y-beta F3'. Southern blot analysis of A-type sheep reveals that these animals have a beta- globin locus similar to that of goat, i.e., 12 globin genes. Thus, the beta-globin locus of B-haplotype sheep resembles that of cows and may have retained the duplicated locus of the ancestor of cows and sheep. Alternatively, the B-sheep locus arrangement may be the result of a deletion of a four-gene set from the triplicated locus.      

Value of routine follow up of women treated for early carcinoma of the breast.

The value of routine follow up of women treated for early breast cancer by mastectomy with or without postoperative radiotherapy was assessed retrospectively. Over eight years 546 patients made 6863 clinic visits, during which 192 first relapses were detected. Ninety three relapses were detected at scheduled (routine) visits and 99 at unscheduled (interval) visits. First relapses within the treated area or in the contralateral breast were detected significantly more commonly at routine visits than were first metastatic relapses (66/89 (74%) compared with 27/103 (26%)). Patients whose local relapse was detected at a routine visit had a significantly better survival than those whose local relapse was detected at an interval visit. A relapse that was potentially curable (local or in the contralateral breast) was detected at 66 (1%) of 6764 routine visits, but only 26 (39%) of these patients remained free of disease. It is concluded that the intensity of follow up of such patients could be reduced without any adverse effect on prognosis but with appreciable financial and other benefits.     

Electrophoretic karyotypes of the elm tree pathogen Ophiostoma ulmi (sensu lato)

Pulsed field gel electrophoresis using OFAGE, TAFE, and CHEF systems has been used to more fully characterize karyotypic variation within the two closely related fungal species of Ophiostoma ulmi sensu lato. Twelve wild-type and laboratory strains, representing the less agressive species O. ulmi and both of the biotypes of the more aggressive species O. novo-ulmi were studied and their karyotypes determined. Depending on the strain, a minimum of four to a minimum of eight chromosomal DNA bands were present that fall into three distinct size classes, with one exception. Strain CESSI6K (O. novo-ulmi, North American aggressive subgroup) contains a unique chromosomal DNA band which comigrated near a Saccharomyces cerevisiae chromosome of 0.95 Mb. This unique band was the smallest O. ulmi s. l. chromosomal DNA observed. Seven of the twelve strains shared a common chromosomal DNA banding pattern, whereas each of the other five had a unique karyotype. There was no correlation between chromosome profile and species, as some O. novo-ulmi and O. ulmi strains shared common electrophoretic karyotypes.     

A Mechanistic Analysis of Self-thinning in Terms of the Carbon Balance of Trees

The self-thinning behavior of a monoculture forest is examinedfrom a mechanistic viewpoint, in terms of the carbon balanceof trees at the stand level. Two approaches are described: thefirst is based on simple assumptions concerning the balancebetween growth, photosynthesis and respiration; the second usesthe process-based I.T.E. EDINBURGH FOREST model, extended toinclude tree birth and death, to examined the assumptions ofthe first approach at a more mechanistic level and to interpretthe observed variation in the responses to shading and soilfertility in terms of a single model. The first approach leads to a power law relation m n ^-1/y betweenmean biomass per tree (m) and the number of trees per unit groundarea (n), where y is the exponent characterising the rate atwhich respiration (r) scales with biomass (i.e. r m^y). Forvalues of y less than 1, m and n are predicted to increase anddecrease, respectively, as powers of time (t) such that thebiomass per unit ground area (M) increases linearly with t forany value of y. When y equals 1, m and n vary exponentiallywith t and M remains constant. When r is assumed to be proportional to stem cambium surfacearea, the value of y is shown to lie in the range 0·5to 1 depending on the rate of stem taper. This leads to slopeson a log m vs. log n self-thinning plot in range -1 to -2 andtypically around -1·5 for rates of taper based on mechanicalrequirements. For the second approach, the I.T.E. EDINBURGH FOREST model,a previously published mechanistic model of plantation growthat the stand level (Thornley, 1991), is extended to naturalstands by introducing average stem birth and death rates thatare functions of the carbon and nitrogen substrate status oftrees. Growth of even-aged and mixed-age forest over about 500years is simulated under a variety of environmental and physiologicalconditions. In general, the forest model predicts a curved log m vs. logn thinning line, but has a reasonably well-defined linear sectionunder most conditions. The slope of the linear portion flattensas the rate at which cambium surface area scales with structuralbiomass increases, in qualitative agreement with the analyticalprediction of the first approach. Quantitative differences betweenthe two approaches are interpreted in terms of the process representedin the forest model. In general, the height of the thinningline increases with irradiance, but is relatively insensitiveto soil nitrogen, with no change in slope in either case. However,at very low irradiance or soil nitrogen levels, the slope flattenscontinuously and the entire thinning line becomes markedly non-linear.Even-aged stands and mixed-age stands have different thinningslopes.Copyright 1993, 1999 Academic Press Self-thinning, carbon balance, mechanistic model, forest growth, respiration     

Inhibition of cell division initiation by an imbalance in the ratio of FtsA to FtsZ.

Elevated levels of FtsA protein block cell division at a very early stage, similar to that caused by inhibition of the action of FtsZ. In contrast, overexpression of FtsA and FtsZ together does not block division. A specific ratio of FtsA to FtsZ protein, therefore, is required for cell division.     

Regulation of expression of the ftsA cell division gene by sequences in upstream genes.

The essential cell division genes ftsQ and ftsA overlap by 1 bp (A. C. Robinson, D. J. Kenan, G. F. Hatfull, N. F. Sullivan, R. Spiegelberg, and W. D. Donachie. J. Bacteriol. 160:546-555, 1984; Q.-M. Yi, S. Rockenbach, J. E. Ward, and J. F. Lutkenhaus. J. Mol. Biol. 184:399-412, 1985). We have previously shown that ftsA can be expressed from a weak promoter located within the ftsQ gene (Robinson et al., J. Bacteriol. 160:546-555, 1984). We report here the effects on ftsA expression of a series of deletions within ftsQ. We find that two regions upstream of the promoter are important in its expression. When both are present, ftsA is expressed, as is also the case when both are absent. The two regulatory elements (O1 and O2) have 9-bp sequences, of which 8 bp are identical.     

Sequencing of the Dutch Elm Disease Fungus Genome Using the Roche/454 GS-FLX Titanium System in a Comparison of Multiple Genomics Core Facilities

As part of the DNA Sequencing Research Group of the Association of Biomolecular Resource Facilities, we have tested the reproducibility of the Roche/454 GS-FLX Titanium System at five core facilities. Experience with the Roche/454 system ranged from <10 to >340 sequencing runs performed. All participating sites were supplied with an aliquot of a common DNA preparation and were requested to conduct sequencing at a common loading condition. The evaluation of sequencing yield and accuracy metrics was assessed at a single site. The study was conducted using a laboratory strain of the Dutch elm disease fungus Ophiostoma novo-ulmi strain H327, an ascomycete, vegetatively haploid fungus with an estimated genome size of 30–50 Mb. We show that the Titanium System is reproducible, with some variation detected in loading conditions, sequencing yield, and homopolymer length accuracy. We demonstrate that reads shorter than the theoretical minimum length are of lower overall quality and not simply truncated reads. The O. novo-ulmi H327 genome assembly is 31.8 Mb and is comprised of eight chromosome-length linear scaffolds, a circular mitochondrial conti of 66.4 kb, and a putative 4.2-kb linear plasmid. We estimate that the nuclear genome encodes 8613 protein coding genes, and the mitochondrion encodes 15 genes and 26 tRNAs.