Intravascular heavy chain-modification of hyaluronan during endotoxic shock

During inflammation, the covalent linking of the ubiquitous extracellular polysaccharide hyaluronan (HA) with the heavy chains (HC) of the serum protein inter alpha inhibitor (IαI) is exclusively mediated by the enzyme tumor necrosis factor α (TNFα)-stimulated-gene-6 (TSG-6). While significant advances have been made regarding how HC-modified HA (HC-HA) is an important regulator of inflammation, it remains unclear why HC-HA plays a critical role in promoting survival in intraperitoneal lipopolysaccharide (LPS)-induced endotoxemia while exerting only a modest role in the outcomes following intratracheal exposure to LPS. To address this gap, the two models of intraperitoneal LPS-induced endotoxic shock and intratracheal LPS-induced acute lung injury were directly compared in TSG-6 knockout mice and littermate controls. HC-HA formation, endogenous TSG-6 activity, and inflammatory markers were assessed in plasma and lung tissue. TSG-6 knockout mice exhibited accelerated mortality during endotoxic shock. While both intraperitoneal and intratracheal LPS induced HC-HA formation in lung parenchyma, only systemically-induced endotoxemia increased plasma TSG-6 levels and intravascular HC-HA formation. Cultured human lung microvascular endothelial cells secreted TSG-6 in response to both TNFα and IL1β stimulation, indicating that, in addition to inflammatory cells, the endothelium may secrete TSG-6 into circulation during systemic inflammation. These data show for the first time that LPS-induced systemic inflammation is uniquely characterized by significant vascular induction of TSG-6 and HC-HA, which may contribute to improved outcomes of endotoxemia.     

The association of cerebrospinal fluid pressure with optic nerve head and macular vessel density

Science China Life Sciences - The present study aims to investigate the effect of temporary cerebrospinal fluid pressure (CSFP) reduction on optic nerve head (ONH) and macular vessel density (VD)...     

A new liquid chromatography/tandem mass spectrometry method for quantification of gangliosides in human plasma

Gangliosides are a family of glycosphingolipids characterized by mono- or polysialic acid-containing oligosaccharides linked through 1,3- and 1,4-β glycosidic bonds with subtle differences in structure that are abundantly present in the central nervous systems of many living organisms. Their cellular surface expression and physiological malfunction are believed to be pathologically implicated in considerable neurological disorders, including Alzheimer and Parkinson diseases. Recently, studies have tentatively elucidated that mental retardation or physical stagnation deteriorates as the physiological profile of gangliosides becomes progressively and distinctively abnormal during the development of these typical neurodegenerative syndromes. In this work, a reverse-phase liquid chromatography/tandem mass spectrometry (LC/MS/MS) assay using standard addition calibration for determination of GM2, GM3, GD2, and GD3 in human plasma has been developed and validated. The analytes and internal standard were extracted from human plasma using a simple protein precipitation procedure. Then the samples were analyzed by reverse-phase ultra-performance liquid chromatography (UPLC)/MS/MS interfaced to mass spectrometry with electrospray ionization using a multiple reaction monitoring mode to obtain superior sensitivity and specificity. This assay was validated for extraction recovery, calibration linearity, precision, and accuracy. Our quick and sensitive method can be applied to monitor ganglioside levels in plasma from normal people and neurodegenerative patients.     

Fine mapping of S32(t), a new gene causing hybrid embryo sac sterility in a Chinese landrace rice (Oryza sativa L.)

Ketan Nangka, the donor of wide compatibility genes, showed sterility when crossed to Tuanguzao, a landrace rice from Yunnan province, China. Genetic and cytological analyses revealed that the semi-sterility was primarily caused by partial abortion of the embryo sac. Genome-wide analysis of the linkage map constructed from the backcross population of Tuanguzao/Ketan Nangka//Ketan Nangka identified two independent loci responsible for the hybrid sterility located on chromosomes 2 and 5, which explained 18.6 and 20.1% of phenotypic variance, respectively. The gene on chromosome 5 mapped to the previously reported sterility gene S31(t), while the gene on chromosome 2, a new hybrid sterility gene, was tentatively designated as S32(t). The BC₁F₂ was developed for further confirmation and fine mapping of S32(t). The gene S32(t) was precisely mapped to the same region as that detected in the BC₁F₁ but its position was narrowed down to an interval of about 1.9 cM between markers RM236 and RM12475. By assaying the recombinant events in the BC₁F₂, S32(t) was further narrowed down to a 64 kb region on the same PAC clone. Sequence analysis of this fragment revealed seven predicted open reading frames, four of which encoded known proteins and three encoded putative proteins. Further analyses showed that wide-compatibility variety Dular had neutral alleles at loci S31(t) and S32(t) that can overcome the sterilities caused by these two genes. These results are useful for map-based cloning of S32(t) and for marker-assisted transferring of the neutral allele in hybrid rice breeding.     

吉林白城地区草原栗斑腹(巫鸟)窝卵数、营巢成功率和繁殖成功率的研究

对分布于吉林白城地区草原生境中栗斑腹巫鸟的窝卵数、营巢成功率和繁殖成功率的初步研究结果表明 ,繁殖期栗斑腹巫鸟种群的平均窝卵数为 5 .0 9± 0 .5 8枚 /巢 ;窝卵数与产卵期、出巢数与产卵期、窝卵数与卵大小之间呈负相关 ,产卵期与孵化率之间存在极显著的负相关关系 ,巢外径与窝卵数之间存在显著的正相关关系 ,巢的其余指标均与窝卵数呈正相关 ;平均孵化期为 12± 0 .4 9d ,孵化率为 36 .3% ,繁殖成功率为 11.11% ;7日龄以上的雏鸟群体大小为 2 .5 6± 1.5 3只 ,栗斑腹巫鸟的雏鸟存活率为 2 7.6 9% .     

土壤病毒生态学研究方法

病毒是地球上最丰富的生物实体,每克土壤中可包含数以亿计的病毒,它不仅影响土壤中其它微生物的群落组成、土壤元素的生物地球化学循环,还会影响土壤微生物的物种进化,甚至影响植物、动物和人体健康。目前人们对土壤中病毒的种类及丰度、分布特征以及功能引起的生态环境效应还知之甚少。在概述病毒生态学研究方法的基础上,对土壤病毒的提取、纯化、定量及分子生态学方法等基本流程进行了比较分析,以期建立一套快速简便、高效稳定的适用于土壤病毒研究的方法,并用于研究土壤病毒的多样性及分布特征,探讨病毒在环境中的生存和传播机制,为土壤病毒的防控及开发利用提供支撑。     

水稻糯性相关基因的全基因组关联分析

利用1 090 071个SNP标记, 对419份广西地方稻种资源核心种质的糯性进行全基因组关联分析。结果表明, 运用混合线性模型, 在P<4.72×10^-8 (4.72E-8)水平下, 检测到45个与糯性显著关联的SNP位点, 均位于第6号染色体上。通过筛选显著关联位点上、下游各150 kb区域内的基因, 共找到305个候选基因, 其中包含2个与淀粉合成酶相关的Wx和SSIIa基因; 同时在第6号染色体5.69-5.89 Mb区域发现4个与糯性显著关联的SNP位点, 该区域可能是影响水稻(Oryza sativa)糯性的重要候选区域。     

新疆两种土地利用方式下土壤病毒的群落组成与功能特征

病毒作为食物网的重要组成部分,在生态系统中发挥着重要的功能。病毒能够影响宿主的死亡率、群落结构和进化,以及营养元素循环。但由于技术方法的限制,对土壤病毒的群落组成和功能特征还知之甚少。为探索不同土地利用方式下土壤病毒组特征,采集了新疆棉花地和荒漠土壤样品。通过宏病毒组学分析发现,棉花地土壤和荒漠土壤分别注释到20个和15个病毒科,单链DNA（ssDNA）病毒占优势,其中微小噬菌体科（Microviridae）占比最高。仅在棉花地土壤中检测到花椰菜花叶病毒科（Caulimoviridae）、逆转录病毒科（Retroviridae）、裸露病毒科（Nudiviridae）、多分DNA病毒科（Polydnaviridae）、杆状病毒科（Baculoviridae）和囊泡病毒科（Ascoviridae）,其中大部分病毒属于植物病毒和昆虫病毒。本研究推测与土地利用方式相关的人为活动、土壤理化性质以及动植物的差异可能影响土壤病毒的群落组成。通过Virsorter共注释到1824条病毒contigs,主要为微小噬菌体科。进一步利用SEED数据库对病毒功能进行注释,发现两个土壤病毒组注释到的主要功能类似;在SEED level 2水平上,均以"Phage capsid proteins"和"Phage packaging machinery"占比最高。本研究可为进一步探索土壤病毒生态功能和土壤食物网提供数据支持。     

Effects of fire disturbance on the soil physical and chemical properties and vegetation of Pinus massoniana forest in south subtropical area

A variety of studies on the impact of fire disturbance on ecosystems has shown that the physical and chemical properties of soil after fire disturbance change notably. Meanwhile, little is known about the effects of different fire intensities on the soil properties and vegetation after fire disturbance, especially in the south subtropical area. In this paper, we analyzed the soil physical and chemical properties, vegetation species and species diversity of fire center, fire edge (which was burned a year ago) and non-burned Pinus massoniana plantation in Gaoyao, Guangdong province, China. The results showed that the soil conductivity, water content, total nitrogen, total potassium, and available potassium content of fire center were significantly higher than those of the non-burned land, and pH was higher than that of fire edge, whereas the available nitrogen, total phosphorus and organic matter content were much lower, which were generally existed in 0–10 cm soil layer and 10–30 cm soil layer. Changes of the soil properties of fire edge were similar with those of fire center, but less significant, and seemed to be more complex. Effects of burning on the vegetation of fire disturbance plots were found to be notable, species number and average height of plants of fire disturbance plots were lower than those of the non-burned plots, a difference of species diversity and uniformity were also shown, and finally, the composition of plant community also changed, e.g., pioneer species such as D. dichotoma, etc., dominated, and drought-resistant plants, heat-resistant plants and positive plants increased after burning.