Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species

Identifying the factors that cause reproductive isolation and their relative importance in species divergence is crucial to our understanding of speciation processes. In most species, natural selection is commonly considered to play a large role in driving speciation. Based on whole genome re-sequencing data from 27 Populus alba and 28 Populus adenopoda individuals, we explored the factors related to reproductive isolation of these two closely related species. The results showed that the two species diverged ~5–10 million years ago (Ma), when the Qinghai–Tibet Plateau reached a certain height and the inland climate of the Asian continent became arid. In highly differentiated genomic regions, the relative divergence (F_ST) and absolute divergence (d_xy) were significantly higher than the genomic background, θπ and shared polymorphisms decreased whereas fixed differences increased, which indicated that natural selection played a key role in the reproductive isolation of the two species. In addition, we found several genes that were related to reproduction that may be involved in explaining the reproductive isolation. Using phylogenetic trees resolved from haplotype data of Populus tomentosa and P. adenopoda, the maternal origin of P. tomentosa from P. adenopoda was likely to be located in Hubei and Chongqing Provinces.     

Functional analyses of small secreted cysteine-rich proteins identified candidate effectors in Verticillium dahliae

Secreted small cysteine-rich proteins (SCPs) play a critical role in modulating host immunity in plant–pathogen interactions. Bioinformatic analyses showed that the fungal pathogen Verticillium dahliae encodes more than 100 VdSCPs, but their roles in host–pathogen interactions have not been fully characterized. Transient expression of 123 VdSCP-encoding genes in Nicotiana benthamiana identified three candidate genes involved in host–pathogen interactions. The expression of these three proteins, VdSCP27, VdSCP113, and VdSCP126, in N. benthamiana resulted in cell death accompanied by a reactive oxygen species burst, callose deposition, and induction of defence genes. The three VdSCPs mainly localized to the periphery of the cell. BAK1 and SOBIR1 (associated with receptor-like protein) were required for the immunity triggered by these three VdSCPs in N. benthamiana. Site-directed mutagenesis showed that cysteine residues that form disulphide bonds are essential for the functioning of VdSCP126, but not VdSCP27 and VdSCP113. VdSCP27, VdSCP113, and VdSCP126 individually are not essential for V. dahliae infection of N. benthamiana and Gossypium hirsutum, although there was a significant reduction of virulence on N. benthamiana and G. hirsutum when inoculated with the VdSCP27/VdSCP126 double deletion strain. These results illustrate that the SCPs play a critical role in the V. dahliae–plant interaction via an intrinsic virulence function and suppress immunity following infection.     

增温、施肥与种内竞争的交互作用对云杉根系属性的影响

增温、施肥与种内竞争的交互作用对云杉根系属性的影响 物种竞争、气温和土壤养分是青藏高原东部高寒地区影响树木生长的重要因素。虽然已开展了大量关于物种竞争、气温、施肥单因素对树木生长的影响研究,但关于这三者的交互作用对根系生长的影响还知之甚少。因此,本研究拟通过测量根系属性(细根长、根表面积、比根长、比表面积、根尖数、根系分支数等)、根生物量,以及根系养分吸收,研究施肥和增温对物种竞争的影响,并进一步探讨施肥、增温与物种竞争的交互作用对云杉(Picea asperata)生长的影响机制以及所采取的适应策略。研究结果表明,增温、施肥和竞争均提高了细根的氮、钾浓度,但并未影响细根生物量和根长、根表面积、根尖数和根分支数等根系特征。然而,无论是增温、施肥,或是它们的联合作用,与物种竞争进行交互时,均增加了根长、根表面积、根尖数、根系分支数和养分吸收。此外,施肥降低了根比表面积、比根长和单位面积的根尖数和根分支数,增温和竞争的交互作用使根比表面积、比根长下降,其他参数不受温度和竞争的影响。该结果表明,云杉在物种竞争、气候变暖、施肥及其交互作用下保持着保守的营养策略。该研究加强了对树木应对全球变化的生理和生态适应性的理解。     

火烧信号对种子萌发影响的研究进展

火作为一个基础的生态因子, 对森林、草地等陆地生态系统的结构和功能有着重要的影响。种子萌发是种子植物的重要生活史阶段, 也是火后植被更新和恢复的主要途径。植被燃烧产生了烟、热以及与烟相关的一系列火烧信号, 在打破种子休眠, 促进种子萌发方面发挥重要作用。该文将火烧信号分为物理信号和化学信号, 物理信号主要是伴随火烧产生的高温, 化学信号主要包括气态烟以及近年来从烟水中提取的影响种子萌发的关键化学物质karrikins和glyceronitrile。该文围绕火烧的基本信息, 火烧信号对种子萌发的影响, 火烧信号在实践中的应用3个方面进行系统综述, 重点探讨了不同类别的火烧信号及其交互作用对种子萌发的影响。在系统总结火烧信号对种子萌发影响的研究进展的基础上, 提出未来的研究应与烟信号作用机理的探究以及全球变化等方面相结合, 旨在充分发挥火的生态服务功能, 为火的科学管理应用和退化生态系统恢复提供理论支撑。     

Molecular Characterization and Alternative Splicing of a Sodium Channel and DSC1 Ortholog Genes in Liposcelis bostrychophila Badonnel (Psocoptera: Liposcelididae)

Alternative splicing greatly contributes to the structural and functional diversity of voltage-gated sodium channels (VGSCs) by generating various isoforms with unique functional and pharmacological properties. Here, we identified a new optional exon 23 located in the linker between domains II and III, and four mutually exclusive exons (exons 27A, 27B, 27C, and 27D) in domains IIIS3 and IIIS4 of the sodium channel of Liposcelis bostrychophila (termed as LbVGSC). This suggested that more alternative splicing phenomena remained to be discovered in VGSCs. Inclusion of exon 27C might lead to generation of non-functional isoforms. Meanwhile, identification of three alternative exons (exons 11, 13A, and 13B), which were located in the linker between domains II and III, indicated that abundant splicing events occurred in the DSC1 ortholog channel of L. bostrychophila (termed as LbSC1). Exons 13A and 13B were generated by intron retention, and the presence of exon 13B relied on the inclusion of exon 13A. Exon 13B was specifically expressed in the embryonic stage and contained an in-frame stop codon, inclusion of which led to generation of truncated proteins with only the first two domains. Additionally, several co-occurring RNA editing events were identified in LbSC1. Furthermore, remarkable similarity between the structure and expression patterns of LbVGSC and LbSC1 were discovered, and a closer evolutionary relationship between VGSCs and DSC1 orthologs was verified. Taken together, the data provided abundant molecular information on VGSC and DSC1 orthologs in L. bostrychophila, a representative Psocoptera storage pest, and insights into the alternative splicing of these two channels.     

一株高产淀粉绿藻——标志链带藻在废水中的培养及对氮磷的去除

为了研究标志链带藻(Desmodesmus insignis strain JNU24)在不同Na NO3浓度和不同废水浓度培养下的生长与代谢产物积累状况,评估标志链带藻对废水的处理能力,本研究利用柱状光反应器对标志链带藻进行培养,分别对4种Na NO3浓度的BG-11培养基和4种废水浓度培养下藻细胞的生物量、蛋白质含量、碳水化合物含量和淀粉含量进行了测定。结果显示,在BG-11培养基中,氮浓度为9.0 mmol/L时,藻细胞生物质浓度最高,达6.23 g/L;在废水培养下,未稀释的原废水实验组,其藻细胞生物质浓度最高,达10.31 g/L;75%废水培养下,藻细胞的淀粉含量最高(达50.9%),单位体积藻细胞淀粉含量和产率分别为4.86 g/L和405 mg·L~(-1)·d~(-1),且显著高于不同浓度Na NO3的BG-11培养基组。本研究还测定了标志链带藻对废水中氮、磷的去除效率,结果显示不同浓度废水培养下,氮、磷的去除效率最高可达90.8%和98.7%。基于柱状反应器中的最佳培养效果,以9.0 mmol/L Na NO3的BG-11培养基和75%废水于3.0 cm光径平板光生物反应器中进行室内扩大培养,结果显示在75%废水培养下,藻细胞生物质浓度达9.75 g/L,淀粉单位体积含量和产率分别达到4.75 g/L和230 mg·L~(-1)·d~(-1),且为9.0 mmol/L Na NO3的BG-11培养基培养的3倍。通过沉降特性分析发现,藻细胞收获90 min后均完全沉降,具有较强的沉降性能。本研究标志链带藻能够耐受废水中较高的氮、磷浓度,且对废水中氮、磷有显著的去除作用;该藻能利用废水中的营养成分积累较高的生物量和淀粉含量并且藻细胞能快速沉降,具有极高的经济价值和应用价值,是一株淀粉生产能力较高和废水处理能力较强的极具开发潜力的藻株。     

The Verticillium dahliae Sho1-MAPK pathway regulates melanin biosynthesis and is required for cotton infection

Verticillium dahliae is a soil-borne fungus that causes vascular wilt on numerous plants worldwide. The fungus survives in the soil for up to 14 years by producing melanized microsclerotia. The protective function of melanin in abiotic stresses is well documented. Here, we found that the V. dahliae tetraspan transmembrane protein VdSho1, a homolog of the Saccharomyces cerevisiae Sho1, acts as an osmosensor, and is required for plant penetration and melanin biosynthesis. The deletion mutant ΔSho1 was incubated on a cellophane membrane substrate that mimics the plant epidermis, revealing that the penetration of ΔSho1 strain was reduced compared to the wild-type strain. Furthermore, VdSho1 regulates melanin biosynthesis by a signalling mechanism requiring a kinase-kinase signalling module of Vst50-Vst11-Vst7. Strains, ΔVst50, ΔVst7 and ΔVst11 also displayed defective penetration and melanin production like the ΔSho1 strain. Defects in penetration and melanin production in ΔSho1 were restored by overexpression of Vst50, suggesting that Vst50 lies downstream of VdSho1 in the regulatory pathway governing penetration and melanin biosynthesis. Data analyses revealed that the transmembrane portion of VdSho1 was essential for both membrane penetration and melanin production. This study demonstrates that Vst50-Vst11-Vst7 module regulates VdSho1-mediated plant penetration and melanin production in V. dahliae, contributing to virulence.     

The Gossypium hirsutum TIR-NBS-LRR gene GhDSC1 mediates resistance against Verticillium wilt

Improving genetic resistance is a preferred method to manage Verticillium wilt of cotton and other hosts. Identifying host resistance is difficult because of the dearth of resistance genes against this pathogen. Previously, a novel candidate gene involved in Verticillium wilt resistance was identified by a genome-wide association study using a panel of Gossypium hirsutum accessions. In this study, we cloned the candidate resistance gene from cotton that encodes a protein sharing homology with the TIR-NBS-LRR receptor-like defence protein DSC1 in Arabidopsis thaliana (hereafter named GhDSC1). GhDSC1 expressed at higher levels in response to Verticillium wilt and jasmonic acid (JA) treatment in resistant cotton cultivars as compared to susceptible cultivars and its product was localized to nucleus. The transfer of GhDSC1 to Arabidopsis conferred Verticillium resistance in an A. thaliana dsc1 mutant. This resistance response was associated with reactive oxygen species (ROS) accumulation and increased expression of JA-signalling-related genes. Furthermore, the expression of GhDSC1 in response to Verticillium wilt and JA signalling in A. thaliana displayed expression patterns similar to GhCAMTA3 in cotton under identical conditions, suggesting a coordinated DSC1 and CAMTA3 response in A. thaliana to Verticillium wilt. Analyses of GhDSC1 sequence polymorphism revealed a single nucleotide polymorphism (SNP) difference between resistant and susceptible cotton accessions, within the P-loop motif encoded by GhDSC1. This SNP difference causes ineffective activation of defence response in susceptible cultivars. These results demonstrated that GhDSC1 confers Verticillium resistance in the model plant system of A. thaliana, and therefore represents a suitable candidate for the genetic engineering of Verticillium wilt resistance in cotton.     

水曲柳腋芽离体快繁研究初报

以水曲柳带顶芽、腋芽茎段为外植体进行离体培养,研究其适宜的灭菌方法、基本培养基种类和激素对腋芽萌发、丛芽产生、芽苗增殖的影响。结果表明,水曲柳的腋芽茎段为快繁的适宜外植体,茎段灭菌以用0.05%HgCl₂处理2 min最好。在萌芽培养中,BA和2ip均可促进腋芽萌发,但以8 mg·L^-1 BA处理时萌发效果最好,萌发率达100％;将腋芽萌发后长成的新枝转入添加ZT的培养基中,出现丛芽,在添加1.0 mg·L^-1的ZT的培养基中增殖效果最好,增殖系数达到3.0。无论在萌芽培养还是增殖培养中均发现WPM培养基最适合水曲柳腋芽的离体快繁。