A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development

The cerebral cortex is divided into many functionally distinct areas. The emergence of these areas during neural development is dependent on the expression patterns of several genes. Along the anterior-posterior axis, gradients of Fgf8, Emx2, Pax6, Coup-tfi, and Sp8 play a particularly strong role in specifying areal identity. However, our understanding of the regulatory interactions between these genes that lead to their confinement to particular spatial patterns is currently qualitative and incomplete. We therefore used a computational model of the interactions between these five genes to determine which interactions, and combinations of interactions, occur in networks that reproduce the anterior-posterior expression patterns observed experimentally. The model treats expression levels as Boolean, reflecting the qualitative nature of the expression data currently available. We simulated gene expression patterns created by all possible networks containing the five genes of interest. We found that only of these networks were able to reproduce the experimentally observed expression patterns. These networks all lacked certain interactions and combinations of interactions including auto-regulation and inductive loops. Many higher order combinations of interactions also never appeared in networks that satisfied our criteria for good performance. While there was remarkable diversity in the structure of the networks that perform well, an analysis of the probability of each interaction gave an indication of which interactions are most likely to be present in the gene network regulating cortical area development. We found that in general, repressive interactions are much more likely than inductive ones, but that mutually repressive loops are not critical for correct network functioning. Overall, our model illuminates the design principles of the gene network regulating cortical area development, and makes novel predictions that can be tested experimentally.     

Estimating the number of genetic elements that defer senescence inDrosophila

Summary Although many different physiological and biochemical changes characterize the process of senescence, little is understood of the genetic elements that determine its age of onset. We provide here the first estimates of the number of genetic factors that extend longevity inDrosophila melanogaster. Life span was measured in F₁, F₂ and backcrosses of true-breeding long and short-lived stocks ofD. melanogaster, established by selection. Estimates of the number of effective factors delaying senescence range from about 0.3 to 1.5, indicating control by a single factor. The distribution of longevity shows this to arise as selection acts on the short-lived parental stock. Life span is extended at the cost of early fecundity.     

REVERSIBLE DEACTIVATION OF NEUROSPORA ASCOSPORES BY LOW TEMPERATURE

Sun, Clare Y., and Alfred S. Sussman. (U. Michigan, Ann Arbor.) Reversible deactivation of Neurospora ascospores by low temperature. Amer. Jour. Bot. 47(7): 589-593. Illus. 1960.—Heat-activated ascospores of Neurospora tetrasperma are reversibly deactivated after incubation at 4°C. for 36–48 hr. Two cycles of deactivation and reactivation are possible although the percentage germination decreases in the last cycle. By contrast, spores held at 20°C., or in glycerol at 4°C., will remain activated for much longer periods of time. If an incubation period at 20°C. greater than 30 min. is interposed before the activated spores are placed at 4°C., germination occurs despite the cold-treatment. Furfural-activated ascospores, when held at 4°C., are deactivated but can be reactivated only by heat, pointing up a difference between ascospores activated by these different means. Although a fraction of the stimulus afforded by heat-sensitization to chemical activators is preserved for 2 days at —20°C., it is dissipated completely after a short time at 4°C. These data are discussed on the basis of the suggestion that the reversible production of a substance initiates a series of steps which lead to germination. Thus, the temperature minimum of the forward reaction is greater than 4°C. whereas the back reaction proceeds at this temperature.