Computation of repetitions and regularities of biologically weighted sequences.

Biological weighted sequences are used extensively in molecular biology as profiles for protein families, in the representation of binding sites and often for the representation of sequences produced by a shotgun sequencing strategy. In this paper, we address three fundamental problems in the area of biologically weighted sequences: (i) computation of repetitions, (ii) pattern matching, and (iii) computation of regularities. Our algorithms can be used as basic building blocks for more sophisticated algorithms applied on weighted sequences.     

Secretory structures and cytochemical investigation of the leaf of Phlomis fruticosa, a seasonally dimorphic subshrub. Secreting activity of the leaf-originating calluses

Various species of the genus Phlomis have been reported to produce metabolites demonstrating significant pharmacological efficiency. In mature summer leaves of Phlomis fruticosa several secretory cells and structures were detected. A spectrum of compounds was localized histochemically within them. Calluses produced from leaf-cell cultures were histochemically investigated as well. Callus cells, although of low-differentiation, are synthetically active and produce various compounds. Many of them could be of pharmaceutical interest.     

A new subspecies of Linum gyaricum (Linaceae) from Greece

Christodoulakis, D. 1995. A new subspecies of Linum gyaricum (Linaceae) from Greece. - Nord. J. Bot. 15: 145–147. Copenhagen. ISSN 0107–055X.
A new subspecies, Linum gyaricum ssp. icaricum from Ikaria island (E Aegean, Greece), is described and illustrated.     

The Combined Environmental Stress on the Leaves of Olea europaea L. and the Relief Mechanism Through Biosynthesis of Certain Secondary Metabolites

Journal of Plant Growth Regulation - Biosynthesis of certain secondary metabolites, as a relief response to the severe environmental stress of the mediterranean summer, is a major reaction of the...     

A two-season impact study on Globularia alypum: adaptive leaf structures and secondary metabolite variations

A detailed histo-anatomical and phytochemical study on Globularia alypum was carried out to investigate season-induced plant responses related to leaf morphology and content of secondary metabolites (SMs). Leaf tissue analysis by light and scanning electron microscopy showed neither morphological nor significant anatomical adaptions/variations to the coldest and the hottest seasons. Both summer and winter leaf tissue resulted amphistomatic with compact mesophyll and capitate glandular trichomes. Epidermal and mesophyll cells showed a significant accumulation of osmiophilic compounds, further characterized as phenolics by the histochemical screening. Beside the morpho-anatomical similarities in tissue arrangement, SMs production, within and among the different natural product classes, resulted seasonally dependent. In total, 24 SMs belonging to iridoids, flavonoids and phenylethanoid glycosides were tentatively assigned by UHPLC-HRMS analysis. Among iridoids, (E)-globularicisin showed to be the prevalent constituent, with content up to 70%. Total iridoid production was increased by 48.1% during summer. Similarly, flavonoid anabolism was more active during the same period, although with less remarkable seasonal variation reaching 25.6%. In contrast to the overall higher production of iridoids and flavonoids, a drastic fall (33.5%) of phenylethanoids was observed during summer.     

Stability of protein-encapsulating DRV liposomes after freeze-drying: A study with BSA and t-PA

Stability of protein-encapsulating DRV (dried-rehydrated vesicle) liposomes is evaluated after freeze-drying vesicles in presence (or not) of trehalose. Two proteins, bovine serum albumin (BSA) and tissue-type plasminogen activator (t-PA), are used, and protein-encapsulating liposomes with different lipid compositions are prepared by DRV technique. Encapsulation efficiencies are calculated, after measuring BSA with a fluorescence technique and t-PA's amidolytic activity toward a chromogenic substrate.Experimental results show that encapsulation of BSA in vesicles ranges between 35 and 53% of the protein and is only slightly affected by lipid composition. For t-PA, entrapment efficiencies are lower, ranging between 2 and 16%, while lipid composition has substantial effect on entrapment (cholesterol inclusion is very important). After freeze-drying, some lipid compositions remain stable, retaining most of initially entrapped proteins, while others do not, but they may be stabilized by trehalose. In the case of BSA, liposome behavior cannot be explained based on lipid membrane rigidity (more rigid = more stable). This may be connected with previously demonstrated interactions of BSA with membranes. Oppositely, t-PA behavior is more predictable, meaning that the lipid composition selected for the specific therapeutic application determines the need for cryoprotectant addition before freeze-drying t-PA containing DRV liposomes, perhaps due to the fact that under conditions applying minimum or no interactions between t-PA and lipid membranes occur.Thereby, interactions between proteins and membranes determine not only the encapsulation efficiency but also the need for cryopreservation of liposomal protein formulations.     

Structure and development of stomata on the primary root of Ceratonia siliqua L

Stomata of various sizes are produced on the primary root of Ceratonia siliqua L. Most are generated during embryogenesis, prior to seed desiccation. They can be detected on the dry embryo in a wide zone just above the root tip. Initially, large stomata are formed. These have the ability to induce divisions of their neighbouring cells, creating particular cell patterns around them. Later, small perigenous stomata are generated. As the root grows following seed germination, the stomatal zone overlaps with that of the root hairs. Although root stomata of C. siliqua undergo a structural differentiation that seems almost identical to that of the elliptical stomata formed on leaves, they are unable to move and remain permanently open. Polarizing microscopy of fully differentiated stomata and young stomata at the stage of stomatal pore formation revealed deposition of radial cellulose microfibril systems on their periclinal walls. However, these systems were less developed than those on leaf stomata, a feature that might be responsible for their inactivity. Besides, plastids of the root guard cells (GCs) do not differentiate into chloroplasts but function solely as amyloplasts. Root stomata have a short life span. During rapid and intense root growth, GCs cannot keep pace with the elongation of their neighbouring rhizodermal cells. They therefore split in their mid-region, transversely to the stoma axis. The two parts of the transversely torn stoma are dragged apart and a large opening is formed on the root surface, just above the substomatal cavity. The root stomata, together with these openings, may facilitate increased gaseous exchange during respiration and/or an increased transfer of some nutrients and water in the rapidly growing primary root.     

Efficient algorithms for counting and reporting segregating sites in genomic sequences.

The number of segregating sites provides an indicator of the degree of DNA sequence variation that is present in a sample, and has been of great interest to the biological, pharmaceutical and medical professions. In this paper, we first provide linear- and expected-sublinear-time algorithms for finding all the segregating sites of a given set of DNA sequences. We also describe a data structure for tracking segregating sites in a set of sequences, such that every time the set is updated with the insertion of a new sequence or removal of an existing one, the segregating sites are updated accordingly without the need to re-scan the entire set of sequences.     

Stability of Protein-Encapsulating DRV Liposomes After Freeze-Drying: A Study with BSA and t-PA

Stability of protein-encapsulating DRV (dried-rehydrated vesicle) liposomes is evaluated after freeze-drying vesicles in presence (or not) of trehalose. Two proteins, bovine serum albumin (BSA) and tissue-type plasminogen activator (t-PA), are used, and protein-encapsulating liposomes with different lipid compositions are prepared by DRV technique. Encapsulation efficiencies are calculated, after measuring BSA with a fluorescence technique and t-PA's amidolytic activity toward a chromogenic substrate.

Experimental results show that encapsulation of BSA in vesicles ranges between 35 and 53% of the protein and is only slightly affected by lipid composition. For t-PA, entrapment efficiencies are lower, ranging between 2 and 16%, while lipid composition has substantial effect on entrapment (cholesterol inclusion is very important). After freeze-drying, some lipid compositions remain stable, retaining most of initially entrapped proteins, while others do not, but they may be stabilized by trehalose. In the case of BSA, liposome behavior cannot be explained based on lipid membrane rigidity (more rigid?=?more stable). This may be connected with previously demonstrated interactions of BSA with membranes. Oppositely, t-PA behavior is more predictable, meaning that the lipid composition selected for the specific therapeutic application determines the need for cryoprotectant addition before freeze-drying t-PA containing DRV liposomes, perhaps due to the fact that under conditions applying minimum or no interactions between t-PA and lipid membranes occur.

Thereby, interactions between proteins and membranes determine not only the encapsulation efficiency but also the need for cryopreservation of liposomal protein formulations.     

Leaf structure and histochemistry of Ecballium elaterium (L.) A. Rich. (squirting cucumber)

Light, scanning and transmission electron microscopy as well as histochemical reactions were employed to study the leaf structure and secretory activity of Ecballium elaterium, a hairy pharmaceutical perennial common in the Mediterranean region. The amphistomatic leaf has a peculiar structure due to special cells supporting the conductive bundles, a remarkable shortage of mechanical tissue, and the existence of pectin strands between mesophyll cells. The secreting activity is limited mostly to secretary hairs. These attributes of the Ecballium leaf fine structures do not resemble the common structure of leaves from Mediterranean plants and point to a peculiar strategy of this species coping with stress conditions of its habitat.